Gene detail

Detailed information of CsqKR_Scaf99_3.23 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf99_3.23	DEUBIQUITINATING PROTEIN VCIP135	chr9	14836440	14845883	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf99_3.23

ATGAACCACTTGGTCTGCGTAACATCCACGTGTTTGGCCTTGCTAATGTCCTCAGACGACCAATCATCCTGCTTGACTCACTCAAGTGGCATGCAGAGTCTGGGAGACTATTCAGGTGTGTTCCTGCCTGGCTTGGTTCCTCCAGAGAAATGTACAAAGGGAGGAGTTTTGAATAAACCTCTGTGTATTGCCTGGAGTAGCTGTGGAAGAAACCATTTTATACCTCTTGTAGGCGTGAAAGGCCGCCAGGTGCCAAAGCTACCACGGTATCTGTTACAGAAAACCTGGGGAGTGCCCAGCACTCTCATAGATCAGTATATTGACTTTCAGGATGGAATGTGTGTTGTTGGGGGTGACAAATCTCTACAGGACCGGTATTTACAGCGTCTTGTTGCTGCAATGGAAGATGTGTTTTTTGAGACGTACAAAGTACATCCCAGTCTTGTGGCCGACGTGCACCAGTTTGTTTACAAAACTTCAGGTTTTGTTGGAGCGAAAATGAAGGTGGTGATTGAGGCTACGCAGACTGCAGTACAAGAACATCGGCTGTACAGATGTCTTCTGTGTGATGCAATCATCGAATATCAGCTTCCTGCTGAGTGGTTCCAGCACGGAGGTAGTCTGTACAACCTTGCTGTTCAGGTACATGGTGAACTCAAAGTTGACAAGAAGTACTCATTTCCTTTGCAAGGAGCTGTGTGCACGTACAACAAGGCACGAGATGAACTGGTTCTGGATAGAACTCAGAGCAGACTTGTCAAGTGTACTTTCTGTCATGGAGATCGTGTGAGGCTGGTGAAAGGGGATGGAAATGTGTTGTATCAGAACGGAGACCGCACCCGAACTCCATCAAACACCACACGATGTACATGCGGCTCCAAACATTACTGGGACGGAAAGGAATATGATAATTTACCTGAAAAACTGCCAGTTACGTTGGAGTGGAATGACAGGACAATCAAGGAGGAGGTGGCATGGTTCCAGTATGAGTCTGACCCAGCACTGAACAGCAATGTCTACGAAGTTGCCCAGAATCTCGTTCAGAAACACTTCCCAGGTGAGTTTGGCAGTGAGAGATTGGTACAGAAAGTTGTAAATAAAATTCTACGTCAGACAGCAGCCCCAGAGCAAGACAATGCTGCATGTGAGACATCAGCCTCAAAAACGTCAACATGGTCCCCAGAATCCTCATCAAAAATCATCATTACAGGACAACAGCACAAAAGCATTCACAAGGAGGAGTTGAACATGAGCGAGACAGAACGAATGGTGAGACAGAAAATTGAAGCGAACGCCCCCCTTCGTCAGAAGAAGAAATCTGGAGATGCCTCCCGACCAGAGACCGCCTCTGGTTCCACCCGCCCCCTGACTGAGATGTCAAGAATCAGTGTAGAAAAAAGACCTGCTACAAGTACATCGCAGCAACGCCCAGAGGCTGCTGCTGCCAGTGCCAGTGCTACAACACAGCCCTCCAGCTCTACTGAGTCCACAACAGCAGCAACATCAGAAGAAAAGAAAATACGAGTAGCAACATCAGAGGGTAAACAGGTGATGTTGACTCTGAAAGACGATGTGACGTTTTCTGAGTTGCAGGATCTCATACAGGGACTGGTCAACATTGCTCCTGACCAGCAGAAACTGAGGATTGGGTTCCCGCCCCAGGAACTGAAAGCAAGTGACTTTGAGAACAACAAGAAAGTTGATCTCAAACACGGAGACAAGATCACAGTTGAAATACTAACAAAGACAAGCACACAACCTGACGTCAGTCAGCCATCCATGTCTGGAGATGGGAAGACTGAGAAACTCAACTGGAGTATGTTTGACGACAACATCGCAGCACCTTCCGACAACTTACTGCAGAATATGTGTCGAACAGAACATGGTGCTGACAACATTGACATGTCCATCTCGTCACTGACCATGTTAGCGACGTTGTCAGGTCGAGATTTGTGGACCTATGCGCAGTGCAATCCTCACCTCTTCTCAGTGGGAGGTCTTTTCTATAAACAGGTGGAGCGTGACCTTGGTCTGGCCAGCGGAAAACATTGTACCATACCTGCCTTACCTGGAAAGGTTTTCAGGTACAATGCGACAGATGACAGACTAGAACTGTGTCTGGAACCGTATGGACATTTCCCTGTTGAGCCTGACATTGAGAAGAAAATCAAAACCAAAGCTCCTGTTGTCAGCGAGGCAAGTCATGATGTCAAGTTTGGCTCTAGTGGTGCAATCTGTCGTGAAGACAGAGGCACAGTGGCCTTCTCTGGACATGGACATTCACTGAAGGCTGCAGACATTCGAATGCCTTCTGACTTAGTGGACACTTCACACCATGGTGCAAAGAGGATGCAGAATCTGTGTGACCCCATGACCCACCAGGAATCTATCACTGAAGTGAACGATGAGACCGAGGCTGCTGCAGCTGACCCCAGACAAGGTCAAGGAGATGACGGTGACACAGGAGAGGCAACTGAGTATCAGAAACTGGGGCCTGGTTTCAGTATAATAAGTCCTGCTGTTAACAGAACCAACATGCAGGTTGATGTTTTCCGTCAGCTCGTTGATGCTATTGAAAAGTCAGTATCAGACTGTGATGACTTCACCGACTCTAACCACGACGACAACGATGCTGTCACTGTCAAAGTTCCACTACCAGGAGGTGGATCAGGAAATAGGAAAAAATATTGA

Transcript

CsqKR_Scaf99_3.23

GAAAATTTAAAATAGGAAGACAGAAAATGGCGTCTCTTTTGGTGTTGACAAACATTGAAGAATATCATCACTTAATGGAGATGTGCATGAAGTGAAGACATCAACTATGACATCAAAGATGAAGTCGACAGATCAGTACAAGGTGCTCAGTGGAATCTGTCCTGATGAGAAGTGTCGAGCTAAACTTCACTTTCCAGCATCTGATAAAAGTGTTGAGTGTACAAGTTGTGGACAACGGCATGAAAAGTCATCACTGCAGAACATCGCTGAGGTTACAGACACCAACATTGCTCTTCACAATCTGCTTCGCAATGTTCTTCTTGGCAATGTCAAGCCACAAAAAGGGCCTGAAAATATCAAAGTTCTTGGCCTGTCCAACTATGTCTGCAAACTGCTGTCCCCCATACTGACACGGTACGGCATGGACAGGCAGACAGGGAAAGCCATGCTACTCACAGAAATGGGTCAGCCAGAAATTTTTGACTGTGGTGTTTTAGGTGACCGGTCATTTCTTATTGACCCAGAGCATCTTTCAGTGGTGGGGTATGGACAGGATAAATCTGGGAGCTTCCAGTATCTGGCAGACACACTGAAAATTATAAAAGAGACAAATGGTGACTGTGACGTTCTGGTTCCTATCCATGCTGACGGTGATGGTCACTGTCTTGTCCATGCTGTGTCGCGAGCTCTCGTTGGACGTGAGTTGTTCTGGCATGCTCTTCGCGTGAACCTGCTCAACCACTTCAGAGAGCAGATGACTCAGTACAAACAGCTGTTTAAAGACTTCATAGACCAGGACGAGTGGGTCACCATCATGAACGAGTGTGATCCAGATTTCATCCCACCTGACAATGAACCACTTGGTCTGCGTAACATCCACGTGTTTGGCCTTGCTAATGTCCTCAGACGACCAATCATCCTGCTTGACTCACTCAAGTGGCATGCAGAGTCTGGGAGACTATTCAGGTGTGTTCCTGCCTGGCTTGGTTCCTCCAGAGAAATGTACAAAGGGAGGAGTTTTGAATAAACCTCTGTGTATTGCCTGGAGTAGCTGTGGAAGAAACCATTTTATACCTCTTGTAGGCGTGAAAGGCCGCCAGGTGCCAAAGCTACCACGGTATCTGTTACAGAAAACCTGGGGAGTGCCCAGCACTCTCATAGATCAGTATATTGACTTTCAGGATGGAATGTGTGTTGTTGGGGGTGACAAATCTCTACAGGACCGGTATTTACAGCGTCTTGTTGCTGCAATGGAAGATGTGTTTTTTGAGACGTACAAAGTACATCCCAGTCTTGTGGCCGACGTGCACCAGTTTGTTTACAAAACTTCAGGTTTTGTTGGAGCGAAAATGAAGGTGGTGATTGAGGCTACGCAGACTGCAGTACAAGAACATCGGCTGTACAGATGTCTTCTGTGTGATGCAATCATCGAATATCAGCTTCCTGCTGAGTGGTTCCAGCACGGAGGTAGTCTGTACAACCTTGCTGTTCAGGTACATGGTGAACTCAAAGTTGACAAGAAGTACTCATTTCCTTTGCAAGGAGCTGTGTGCACGTACAACAAGGCACGAGATGAACTGGTTCTGGATAGAACTCAGAGCAGACTTGTCAAGTGTACTTTCTGTCATGGAGATCGTGTGAGGCTGGTGAAAGGGGATGGAAATGTGTTGTATCAGAACGGAGACCGCACCCGAACTCCATCAAACACCACACGATGTACATGCGGCTCCAAACATTACTGGGACGGAAAGGAATATGATAATTTACCTGAAAAACTGCCAGTTACGTTGGAGTGGAATGACAGGACAATCAAGGAGGAGGTGGCATGGTTCCAGTATGAGTCTGACCCAGCACTGAACAGCAATGTCTACGAAGTTGCCCAGAATCTCGTTCAGAAACACTTCCCAGGTGAGTTTGGCAGTGAGAGATTGGTACAGAAAGTTGTAAATAAAATTCTACGTCAGACAGCAGCCCCAGAGCAAGACAATGCTGCATGTGAGACATCAGCCTCAAAAACGTCAACATGGTCCCCAGAATCCTCATCAAAAATCATCATTACAGGACAACAGCACAAAAGCATTCACAAGGAGGAGTTGAACATGAGCGAGACAGAACGAATGGTGAGACAGAAAATTGAAGCGAACGCCCCCCTTCGTCAGAAGAAGAAATCTGGAGATGCCTCCCGACCAGAGACCGCCTCTGGTTCCACCCGCCCCCTGACTGAGATGTCAAGAATCAGTGTAGAAAAAAGACCTGCTACAAGTACATCGCAGCAACGCCCAGAGGCTGCTGCTGCCAGTGCCAGTGCTACAACACAGCCCTCCAGCTCTACTGAGTCCACAACAGCAGCAACATCAGAAGAAAAGAAAATACGAGTAGCAACATCAGAGGGTAAACAGGTGATGTTGACTCTGAAAGACGATGTGACGTTTTCTGAGTTGCAGGATCTCATACAGGGACTGGTCAACATTGCTCCTGACCAGCAGAAACTGAGGATTGGGTTCCCGCCCCAGGAACTGAAAGCAAGTGACTTTGAGAACAACAAGAAAGTTGATCTCAAACACGGAGACAAGATCACAGTTGAAATACTAACAAAGACAAGCACACAACCTGACGTCAGTCAGCCATCCATGTCTGGAGATGGGAAGACTGAGAAACTCAACTGGAGTATGTTTGACGACAACATCGCAGCACCTTCCGACAACTTACTGCAGAATATGTGTCGAACAGAACATGGTGCTGACAACATTGACATGTCCATCTCGTCACTGACCATGTTAGCGACGTTGTCAGGTCGAGATTTGTGGACCTATGCGCAGTGCAATCCTCACCTCTTCTCAGTGGGAGGTCTTTTCTATAAACAGGTGGAGCGTGACCTTGGTCTGGCCAGCGGAAAACATTGTACCATACCTGCCTTACCTGGAAAGGTTTTCAGGTACAATGCGACAGATGACAGACTAGAACTGTGTCTGGAACCGTATGGACATTTCCCTGTTGAGCCTGACATTGAGAAGAAAATCAAAACCAAAGCTCCTGTTGTCAGCGAGGCAAGTCATGATGTCAAGTTTGGCTCTAGTGGTGCAATCTGTCGTGAAGACAGAGGCACAGTGGCCTTCTCTGGACATGGACATTCACTGAAGGCTGCAGACATTCGAATGCCTTCTGACTTAGTGGACACTTCACACCATGGTGCAAAGAGGATGCAGAATCTGTGTGACCCCATGACCCACCAGGAATCTATCACTGAAGTGAACGATGAGACCGAGGCTGCTGCAGCTGACCCCAGACAAGGTCAAGGAGATGACGGTGACACAGGAGAGGCAACTGAGTATCAGAAACTGGGGCCTGGTTTCAGTATAATAAGTCCTGCTGTTAACAGAACCAACATGCAGGTTGATGTTTTCCGTCAGCTCGTTGATGCTATTGAAAAGTCAGTATCAGACTGTGATGACTTCACCGACTCTAACCACGACGACAACGATGCTGTCACTGTCAAAGTTCCACTACCAGGAGGTGGATCAGGAAATAGGAAAAAATATTGAGAACCGAGAAGAAACCAAAAAGGATGAACAGATGGACACCAGCTAGGACACTGTCTGTTCTTTTGACTGTACAGTGGTGTTGTCTGCGATGCATCTGTTGTCACCAGCTAGCTGCACTTGACTGTGATACTCGTCATAATAAACCTGTTTTCAAACAGCTTCGTATTTCCCATATTTTAATAAATTATTTAAATACTCGGCTGTTTTGTCTCTCAATAACCAATTTCAAATTTATGTGATTGATTACAGAAATATAATTAACAAAATCTGTGTAATTTATATCATCTGATCAGTTGGAAAGAGACAAAAGACATTCAAAATGTTTGATGTTACTGATTATGTTTGAGAAATATATCATAGTGTATCCAAAATCTTGGAATAATGGGGGTTTTGGGGGTTTTACTCCCCAAATTTTACAAATAAAGACTTCTATCTTTAATCCAAGTTAAAAGAATAGCAAAACACTTCAATTTTAGGGCTGTTTTAGACTTTTTTAGTTATTGTTAACAGTATAGATAAATTATATTTAAAAAATAAGAAAACTAAAAAGAAATGCTGAAATACTTTATTACAGAAACAGTAACAAAATGAATTTGTTCATTCTGCTCTAAAGTGTAGAAACACTCAAATATAAATTTTTGATCAGGTGCAAATGTACAAACTGAAACTAAATTAAAAAATTTTGATCTTTTAAACAGGATATTTATTTTCATTGTTATTGATTTTTATTTTATTTTATTTTTTTTTTTTTTTTTTTGATTTCACTTATTATT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21403	OTU1_UBXL	OTU1, UBXL domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR039087	Family	Deubiquitinating protein VCPIP1	Interproscan
IPR048857	Domain	OTU1, Ubl domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14843	DEUBIQUITINATING PROTEIN VCIP135	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016320	Biological Process	endoplasmic reticulum membrane fusion	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0035871	Biological Process	protein K11-linked deubiquitination	Interproscan
GO:0071108	Biological Process	protein K48-linked deubiquitination	Interproscan
GO:0090168	Biological Process	Golgi reassembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf99_3.23 global RNA-seq network