Gene detail

Detailed information of CsqKR_Scaf98_6.12 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf98_6.12	NOTCH LIGAND FAMILY MEMBER	chr7	33980174	33988397	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf98_6.12

GTACATTACGACGTCACGGATTCGATTGTAAAAACTCGAAAACCTCGAAAACCTGAAAACCCTAGAGCGCAATTGGGCTAAAGGCGCGAGTGAGTATCGACTTATTATGATTACCGGAGTGATTGATTGAGGCGGCATCCCGGAAGATCGAGGTAAAATCACGCAGGTTACCAAATGAAGCATATCTCCGCGGACACGCGCGCTATGGTGGATAGACCTGTGATATGCTTTGCCGTACCTTTCCCATACTTCTACTCACCTTGCTAACCGAATTCAAGATATCCCAAACATCCGGGGTATTTGAAATAGGGTTCGTGTCCTATACGTTGCAATATGGCGGTCAGCACACTGGACAGCACACTGGACAGAAGCCCCAGGGCGTCGTCAATAGCAACGTGAAGTCCACTCAACATTCTGACGAACTCTTCAAACCATGGCTTAACAATGCGCAGTGCTCATCTCCTCCGAAATACAGATTTTACTTGTGTCTGAGGAGCACGTCAAATAATTCGTCTTGCGATCTGGGACATGAAGAAATTCCCCTGACCCAGGCGGATGTCAGTCGGGGAAGCGCGCCCGTGTCTGGTCGAGATCAGGTGCTGTTCGGTAACAGGCCTCTTCGCATATCCCCAACTCCACTGAGAAACCCAGTACAGTACAGATTCCAGTCCTGGGTGGGGTCACTGGTGCTAGACGTGTATGTGGAATGCTGCGGGACACCAGCTGACATTAGAACGCAGTGCAAAGAAAAGTTATCACTGAATGTGACAGCGACTCCAAACACACAGGTCACGTCACCACGCTACACAGAGGTTTCTCTTAGTGGACGTGCCACACTGGTTCTTATGCTGTCTCTCTATTGTCATCCAAATTTCTACGGACCAACTTGTCAGAAATTCTGTCAGATCACCAACCCACACGAAAACAGGGTGTGTCACCCCTGGACAGGGGATCTCGTGTGCAGGCCAGGGTTCACAGGTGCAAGGTGCAATGAAGATAAAAACGAGTGTGAAGAACACATTTGTAAAAATGGCGGCCAGTGTATAAACTTAGTTGGATCTTTCCGCTGTAACTGTCGTTCAGGCGTCTCCACCGGCCGATACTGCGAGGTCATCGTTCCAAGCTGTCCCAGAAATCCTTGTAAAAATGGCGGCACCTGTGAAGAGATTAACCCGGGGTACAAGTGTCACTGTGTAGCGGGGTGGAAGGGAGGCTCGTGTGAGGTCAAGGACAAGTCGCCAGTCGCTGTCCTGCTGCGAGAACAAAAGAAAACAAGTGATGGCATTTTACTGAGTGTTTCTGAAGAAAAATCCCATCCCACCAACGACAGTTCAGCTGAAGAAAATGACGAGTCGGGAAAGCAGTATTTGTGGTACCTAGGAATTGGTTTTGTTGTTCTTACCGTTGTTGTCGCCATCATTTCGATTTTCTGCGTCATCTGGGCAGGAAAAAGGAAAGTTATAAAATTCAAGAAAACAGGTAAATACGAAGTTCCAACTAATTCCACAGCGTCGCCTGTTTCCATTCAAACCACCACGGGTAGTTTCGATAACGACGTTTACTTCCGTGACCCGGAAGTGCTCGATCTGCGTCCTGTAGTTCCTCCATCGACCTCGACGCTCTACCAAAGAACTTTAGTGCCAGACAGCGGGTACACTAACGCCAGATCGCTCTACGAAGACCGCATACAGCCGGACTACGACAGTACGTTACCTAGCAACGGCACCTCTAGGGAAAGAAAGCGCAGCGTCACTCATCTCATGGAGGGCAGCAGACGTGACTCGGGCGACGTCTGCGCGGCGGACTGGAGCCGCGGCGCGACTAGCAGAGACAACGACAGCCACTACGAAGAGATCGACATGAAAGGCCTGTCGTCTGCCGGGGTTCCGTGGACAGACTACGACGTCTCACGCGAAGACGTGAAAGGAATCGAGTACCGCAAGACGAGCTCTGTTTCGCTTGGCGCACTAGAGTCAGAGGAGAAGCCGAGCTGGCTGGCGGAAAACGCGAAGAGGAAGAACAGCACGTCTGCTATCAGCGGGGGTCTCGCCAACTGGCCCAGCGAGAACAACACGCGGAAGAAAAAAGGAGGCTACGACCTGAAATCCGCCTGGTGACCTTAGACGTCGAATTTGTGATGTAATTAATAAAATGTTAAAGCGTAGCAGTCCAAACAGGCAACGAAAAAAAAAAAAAAAAAAAAAAAAATTATATTTCTGATATAGCGATATTAAACTATACGTTTTAGAGATA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF01414	DSL	Delta serrate ligand	Domain	Interproscan
PF12661	hEGF	Human growth factor-like EGF	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001774	Domain	Delta/Serrate/lag-2 (DSL) protein	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR002049	Domain	Laminin-type EGF domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR013032	Conserved_site	EGF-like, conserved site	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR050906	Family	Notch signaling pathway	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24044	NOTCH LIGAND FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005112	Molecular Function	Notch binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0007154	Biological Process	cell communication	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf98_6.12 global RNA-seq network