Gene detail

Detailed information of CsqKR_Scaf98_5.34 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf98_5.34	NOTCH LIGAND FAMILY MEMBER	chr7	33946208	33956030	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf98_5.34

ATCCACTTTTACCTTCCTTTTAAAATAGTTACCTGTGAATTGAAGAGTTCAGTTTTGTGGTTTCTGTTTTTAAAACAAACACGAGAGACGTGAAGATGTTCAACAAACGTGTGATCACCATTCTCTTTCTTCTGTTTACTCTGTTTCAGCCAGCGACATGCAGTGGAAAGTTTGAAGTGAAGTTTCTGAAGTACATCAACCGCGACGGGAAAGGATCCAATGGAAACTGCTGTGAAACACCTTTTCCTTTCTTATGTAAAGGTTCCTGCGACTACAGGTTTACTGTGTGTGTGGACAGAAACACAGGAAGCGATCATATGAGCTACTGTCCCCTGGGGAAAAAACACACAGGAGAAGTCTCTGATCAAGACAACATCGACAGTTTCGGGTCTTCTATAGGAGGAACGCCAAACCCAATGGTGTTTAGTGTGACTACGATGCCGTCCGTGGTACGTTTGAAGTTTGACATTGTCGACGTTGATGATGTTAATTCTTGGGACCACGTTGACTTCCTCATACACGTCGTTTCCTCCATGAATGTGGCAAAATCAAAAGAAGACAGTAAAGATGATTTCAACTGTTCTTGTACTGACGAATGGGTCGGCCCAACTTGTGAAGATCCGCTAAACGCCTGCTATGATGCTCCCTGTCTAAATGGTGGAAACTGCACACTGGACAATTCGGTGTTGGGTTACAGATGCGACTGTGACAAATCGCAGTGGGGAGGATCAACATGCGAGATAAAGTTATTTGACTTTGATGGTCGTAACAAGAAAAGACATACTTCTGTTCGGTACGATTCTGGACGACAACAAACTTTTACAAGGTCAACTCCACACTGGACAAATGTGACTAAAGTGTCGTTTGTAGCAGCTACAAACGGAGGTAAAGACGTCATCCCTCTTTCAGACATTGAAAACATCTTCAACAACCACACAACTGAACAAATCGAACAATACCTTCCACTTCCGCTCTACACCGGAACCGGATATCAGGCTGTGTTTTCGAGACAAATATCCAGCATCTCAGAGGGAACCTGGGCTGCTCACTACTGGTACGTTGTCCTCCTCGTCCTTCTGGTCGTCGTTGTAGTCGTCGTCCTCGGAACATTATTTTACTTACGTCGACGACGAAAGCAAAAGGATGGTTTCAAACACGAACTGAATGGCGTTACGGCCCCAGACGGAAATCTAAACGTTGCGTTTGAAAACGACATGTATCTCCAAATGAACCGGGCCAACTCGGAAACGGAAGGAGCAACCCACGTCAATGACAACCCAATGTTCAACGCCCCTCGTCCCCTGCTCGTCATTGCCAACAACGTCGCAGCTACGACGACTGACTCCGATACGCGACCTCACCAGCTGCTGCTGAACGGGATAACCGCTGCAGATTCGACAACAGAAAATCCTTACATGGAGCCGACCAAGCACTACGACATCCCTCCTCTGCGATCCCAGCAACCGCCCGAACGATCGCATTACGAGAACAGTTGCCTGGATACGCGAGATCTCGCCGGCTCCGAGAAGACAGATAACTTCTACACCGACTTCCAGAATCTGGAGGGAAAGCCCGAGGAAAACCACTACCAGGACTTGGACGAGTTAACGCAAGAAAAAACCGGACTGGAAGAAAAAGTGGTGCTGCCAAGTGATTCCGAGGAGGATGAAATCGACGCCATTAAGAAGCAGATAAAAGCAGAAAAGGAAAAACAAGACGGGGAATAAAATGGCGAGACTGAATGGATCAACAGGCAATTTGCTACTTTGTGTTAATTAAATAGTTCTTTTTACATATTTAAATTTTAATTTCATTTAAACACACGAATCCAGAAAGCGAACAATGGTTTCCACTTCCGCTGAACACCGGAAACGGATATTTGGCAGTGTTTTCCAGACAAATATCAAACGTAAACACAGAGAAATAGATAATTACTTATCTTGACCGATATTTTGTTAAAAGGATTTAAAAAGCAAAGAAAAAAAGAAGAAAAAAAAGTCTTTGTTACAACTTGTAAATAATTAGGCTTAGTAATGCGAAAAGCTATGAAACGCTGTATTAATTTTTAAACGAAATTAACTGAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07657	MNNL	N terminus of Notch ligand C2-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR011651	Domain	Notch ligand, N-terminal domain	Interproscan
IPR050906	Family	Notch signaling pathway	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24044	NOTCH LIGAND FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005112	Molecular Function	Notch binding	Interproscan
GO:0007219	Biological Process	Notch signaling pathway	Interproscan
GO:0007275	Biological Process	multicellular organism development	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf98_5.34 global RNA-seq network