Gene detail

Detailed information of CsqKR_Scaf98_5.24 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf98_5.24	CRUMBS FAMILY MEMBER	chr7	33958944	33965071	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf98_5.24

TATATATATTTTTTTACTTTTTAGTTGCAAATTGGAACTTGTTTGCACGATTTTGCGGTTATCCTGTTATTTCGTTCTCTTGTTTTTCAGAAGCGATCACATGAGCTACTGTCCCCTGGGGAAAAAACACACAGGAGAAGTCTCTGATCAAGACAACATCTACAGTTTCGGGTCTTCTATAGGAGGAACGCCAAACCCAATGGTGTTTAGTGTGACTACGATGCCGTCCGTGGTACGTTTGAAGTTTGACATTGTCGATGTTGATGATCATAATTCTTGGGACCACGTTGACTCCCTCATACACGTCGTTTCCTCCATGAATGTGGCAAAATCAAAAGAAGAGTCTTACTTCAGACAATATGAATTTTCTGCCAGAACTAGTATGAAAATTGCCTTTCGATCTTACTGTGATCCACACTACTACACGAAAAATTGTTCTGTCTACTGTCGCCCTCCAAGATACCCGACTGAGCACTACATCTGTAACAAATACACAGGAGATAAAATATGTCTGCCTGGATGGACGGGACCGAATTGTTCAGAAGATATAAACGAATGCGAGGGAAATCCTTGTAACAATGGCGGAACTTGTATAAACTTCCAGAATGGATACTCATGTACATGTAAAAACGGATTTGGAGGATGGCACTGTGACAACATTACGAGTAAATGTGCCACTGACCCGTGTAAAAACAACGGAACGTGCGTCTCTAGCAGTAAAGATGATTTCAACTGTTCTTGTACTGACGAATGGGTCGGCCCAACTTGTGAAGATCCGCTAAACGCCTGCTATGGTGCTCCCTGTCTAAATGGTGGAAACTGCACACTGGACAATTCGGTGTTGGGTTACACATGCGACTGTGACAAATCGCAGTGGGGAGGATCAAAATGCGAGATACAATTGTTTGACTTCGATGGTCCAAGAAAAGACATACTTCTGTTCGGCACGATTCTGGACGACAACAAACTTTTACAAGGTCAACTCCACACTGGTTTGATAAACATTCTTCGTTTCCTCGGCGGATACAATAAATATGTTCGAGTGAAATACACCACAGATGCCTTTGAAAATGAAAAGAAGACAAATGTGACTAAAGTGTCGTTTGTAGCAGCTACAAACGGAGGTAAAGACGTCATCCCTCTTTCAGACATTGAAAACATCTTCAACAACCACACAACTGAACAAATCGAACAATACCTTCCACTTCCGCTCTACACCGGAACCGGATATCAGGCTGTGTTTTCGAGACAAATATCCAGCATCTCAGGGGGAACATGGGCTGCTCACTACTGGTACGTCGTGCTCCTCGTCCTTCTGGCCGTCGTTGTAGTCGTCGTCCTCGGAACATTATTTTACTTACGTCGACGACGAAAGCAAAAGGATGGTTTCAAACACGAACTGAATGGCGTTACGGCCCCAGACGGAAATCTAAACGTTGCGTTTGAAAACGACATGTATCTCCGAATGAACCGGGCCAACTCGGAAGTGGAAGGAGCAACCCACGTCAATGACAACCCAATGTTCAACGCCCCTCGTCCCCTGCCCGTCATTGCCAACAACGTCGCAGCTACGACGACTGACTCCGATACGCGACCTCACCAGCTGCTGCTGAACGGGATAACCGCTGCAGATTCGACAACAGAAAATCCATACATGGAGCCGACCAAGCACTACGACATCCCTCCTCTGCGATCCCAGCAACCGCCCGAACGATCGCACTACGAGAACAGTTGCCTGGATACGCGAGATCTCGCCGGCTCCGAGAAGACAGATAACTTCTACACCGACTTCCAGAATCTGGAGGGAAAGCCCGAGGAAAACCACTACCAGGACTTGGACGAGTTAACGCAAGAAAAAACCGGACTGGAAGAAAAAGTGGTGCTGCCAAGTGATTCCGAGGAGGATGAAATCGACGCCATTAAGAAGCAGATAAAAGCAGAAAAGGAAAAACAAGACGGGGAATAAAATGGCGAGACTGAATGGATCAACAGGCAATTTGCTACTTTGTGTTAATTAAATAGTTATTTTTACATATTTAAATTTTAATTTCATTTAAACACACTAATCCAGAAAGCGAACAATGGTTTCCACTTCCGCTGAACACCGGAAACGGATATTTGGCAGTGTTTTCCAGACAAATGTCAAGCGTAAACACAGAGAAATAGATAATTACTTATCTTGACCGATATTTTGTTAAAAGGATTTAGAAAGAAAAGGAAAAAAGAAGAAAAAAAGTCTTTGTTACAACTTGTTAATAATTAGGCTTAGTAATGCGAAAAGCTATGAAACGCTGTATTAATTTTTAAACGAAATTAACTGAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF01414	DSL	Delta serrate ligand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001774	Domain	Delta/Serrate/lag-2 (DSL) protein	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR051022	Family	Notch Signaling and Cell Fate Determination	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049	CRUMBS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007154	Biological Process	cell communication	Interproscan
GO:0007157	Biological Process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0032991	Cellular Component	protein-containing complex	Interproscan
GO:0045197	Biological Process	establishment or maintenance of epithelial cell apical/basal polarity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf98_5.24 global RNA-seq network