Gene detail

Detailed information of CsqKR_Scaf98_29.38 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf98_29.38	VILLIN	chr7	36325311	36339000	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf98_29.38

GAAACATGACTTTGTATTTATCTAGTTTTGTTCCTTTTCCATATGTAGCTCTTAGACTACCCGTTACGTAATTAACAACATTTATTACACACCTGCTATAAATAGTCTATAGCTGACACTGTACGAGTGATATCTCGGGCTGTTCCGTTGCATCGATTACCAACCGGACCTCAAGTTCAGTTACTGGGGAAAATACAAACAACTGAATGTACAAGGGCTTTGTCGCCAGTAAAACAGTCACGTGATACCGTGTCAGTTTTCTATTTTACGTCTATAGTAAGTTTTATCTGCAATTAAAATCATTTGTTTGTTAAAGGACATGGTTTTTGTTAGTCATCACACCGTGATTTTGTTACTCAGTCTAGTGTGACACTTGATGACGTATGTCCAGCTATCGTCTGCTCTATAAATACAGACGACATTGAACGAGCAGGTTTAAAAAAAAACAAACAAGAAAGATAAAACCAGCAGAACAGCTCCCGATCCACTGACAACCCAAACACAGCAATGACAGGTTTAATTAAAGCAAAAGATTACGACTGGAAAGACAGTAACCTTGAACTTTTTGGTTCTGATCTTGACAGGAACGTGAAAAAGGAATCAGCTGAAACGGAACCTGCCTGGAAAAATGCTGGTAAAAAACCAGGTCTTCAGATCTGGAGAATTGTGAAATTTAAAGTAACAGACTGGCCAAAAGAGGATTATGGGAAATTTTTCAACGGTGATTCATATATTGTTTTGAACACGTACAAAGAAGAGGGAAAGGATCAGCTGTTGTTTGACATCCACTTCTGGATAGGAAAACACAGCACTCAGGATGAATATGGGACAGCTGCGTACAAAACTGTTGAACTCGACACACTTCTTGATGACGTTCCCATACAACATCGTGAAGTTCAAGGTCACGAATCAGAACTTTTCAAGAGTTACTTCCCTGCAATCACCATACTGGAGGGAGGGGCTGAAAGCGGGTTCAGACACGTCAAACCGGAAGAGTATAAACCCAGACTGTTTCATTTTCATGGCGACAGGAAGCACGTTGACGTGAAAGAGGTTCCAAGAGCTAAAAGCCGATTGGATAGAACTGATGTGTTTATTCTGGATCTAGGTTTGAGAATAATTCAGTGGAACGGAAGTGGATCTAACAAAGATGAAAGATTCCGAGCGTCCCAGTACCTGATTGGTCTGGTACAAGAGAGGAATGGAAGAGCTAAGACTGAAGTAATAGATGAAGATGGGAAAGACTCTGATGCTGAATTTATGAAATTTCTCACTGAAGAGGACTGTGAGGACACAGAAAAGCAGTATGAGGCAGCTGACACATGTAAACAACTGTTCAGACTCTCTGATGCTAGTGGCAGTTTGCAGTTTTCTCTGGAAAAAGAAGGCACTGTTACCAAAGGTGACTTTGACAGCAAGGATGTGTTTATCTTTGACACAAAGCAGCAGCTCTTTGTGTGGATAGGTAAACAGACAAGTCCAGAAGAAAAGAAGAATGCACTTGTTTATGCTCACAAATATCTGATGAAGTCAGATCATCCACTTGTACCAGTGAGCTGTCTGAAGGAGGAAAGACCAAACCACGCGTTCCTCAGTGCCATCGCAGCCTGAGCCAGAAACACTGAAACAATTTATTTTTAACCGTTGATCTTTGGTGAAATGTTTATCATTATGTTCATTGGTACCCTCGCAACTTGAACTAGATAAACAGAAACATTTTATCTTTAACTGTGAACTTTGGTGAAATGGTTATAATTATGAAACTATTATTAACTTGTGAATTAAATTGCAATTCTAACATCATTGTCTTATGATATTGTTAAAACACTTTTAAAATGTAAAACAACTTGCTATATACTGTTTCACTGGTAATCACGTTTTGAAAACATTTTATTATCTTGGTTGGGGAGATGAAAAATTTATTAATTTGTCTAGTTGTTATTAATTCTTTTTGTTTCTGGTATTTTACAAATTTTGTTAATAGAAAACAACTCCTGTTTTCAGTTTGTTTATGGAAATCTTGTAATGAAAACCATGAGCCAACAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00626	Gelsolin	Gelsolin repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007122	Family	Villin/Gelsolin	Interproscan
IPR007123	Domain	Gelsolin-like domain	Interproscan
IPR029006	Homologous_superfamily	ADF-H/Gelsolin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11977	VILLIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005546	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008154	Biological Process	actin polymerization or depolymerization	Interproscan
GO:0015629	Cellular Component	actin cytoskeleton	Interproscan
GO:0051014	Biological Process	actin filament severing	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:0051016	Biological Process	barbed-end actin filament capping	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf98_29.38 global RNA-seq network