Gene detail

Detailed information of CsqKR_Scaf98_23.16 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf98_23.16	GTP-BINDING PROTEIN-RELATED	chr7	35676485	35684840	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf98_23.16

TTTGAAGGCTGACAACACGTGTTTTTGTTTTCAATAATCATTCCTGAAATTCTGTTGAATTTCCTAACATATATAAAGCTTGTCTTTCAAAATTCAGAATGGTGCGTCAGTTCTTGAAAAAACGAAGTAAGAGGTTGAAGGCCAAGACAAGATACAAAGTAGAAAAGAAGGTCAGAGAACATCGCAGAAAAGTAAGAAAAGAAGAAAAGAAAAATCTTCATAAAAAGAAAAAAAAGGACCCAGGCATTCCAAACAGTTTTCCTTTCAAGGAGCAGATTTTACAGGAAGCTGAGCAGAGGAGAATCAGAGCTTCGGAAGAGCAGGAGAGACTAAAAGAAAAACGGAAAAAAGAAAGAGAAAAACTGCTTGCCAAAAAACGAAATCTTGACAGTATGGTTCAGGATGCAATTAAAAAACAGAAAGAATTTGAGAGAAAAAAGTCTGTGAAAGATGTTTTAGATGGTAAAGCTACTGGCAAGAAAATGGAAAGTTCTCTCAAAGCATATTACAAAGAGTTTAAAAAGGTGATTGATGCTGCTGATGTTGTTCTTGAAGTTCTTGATGCGAGGGATCCTATTGGTAGTCGATGTGTAGAAGTGGAGCGAGCCATACTGGAGAGTGGCACAAATAAAAAATTAGTCCTCGTCCTTAACAAAATAGATCTGGTACCAAAAGAGAATGTTGAGGCTTGGCTAAAACATTTGAGAAACGAATTTCCTACAGTGGCATTCAAAGCCTCAACTCAGACACAGAGTGATAACTTGGCACAGAGGAAAGTGAAAATGACAACAGCCAGTGACAATTTACGTAAAACTAGTGTTTGTCTCGGAGCAGACATTTTGATGAAATTACTTGGTAACTATGCTCGCAACAAGGATGTGAAAACAACAATAAGAGTTGGTGTTGTAGGTTTTCCTAACACTGGAAAGAGCAGTATAATAAACAGTCTGAAGAGGTCAAAAGTGTGCAATGTTGGAGGCATGCCAGGTATAACAAAAACGATGCAGATGGTAACTCTGGATAAACACATCAGACTTCTGGACAGTCCAGGCGTGGTCATGGCAAAATCATCAGACACAAACACTGTGCTCAGAAATGTTGTCAAGCTCGAAACAGTTGCAGATCCAGCTGAACCAGTAGAAGCCATTTTAAAACGTTGCAATAAACAACAGATGATGCTACATTATAATGTGGCTGATTACAAAGACATACATGAATTTCTTTCGTTGCTTGCTACAAGACTGGGAAAACTAAAGAAAGGAGGGATCCCTGATGTAAACAAAGCTGCCAGAATGGTGCTCAATGACTGGATGAGTGGTAGAATAACATATTTCACACATCCACCAGAGCAAAACAGTTTACCTTCACACATCAGTGCAGAAATTGTCTCGGAAATGGGAAAATCTTTTAACCTGGATTTGATCAAAGACGATGAAACAGCTTGTTTACAAAATTTAAAACCAAAAACAGCTGATCACATACTGGTGGAATCAATGGGTCCACTGAGTGTTGTTGTAGATGAGTCTGATCTGCCTGTAGAAACTAGTATTGAAGATGATGTTGAAGAGGAGGAAGAGGATGTAGATGAAGACATGGAAGATGAGGAAGATATGGAAGAGAATTCTGGCAATGAGAGTTTGCCAAAAGAAATGACAATTTCTTTACCAACTACAAGATCAGCTTCGGCCATCAGTTCTGCAAAAAGTCTTCAAAGTAAGAAGGACAAAGTGTCAAAGGTTACCAATGACAAAGTGACTGACATTCTTCAGCTAAACAAAGAAAGAAAACAGCAGTTTAAGAAGATGAAAAAACGAAAGAAAAAGAGCAGATGCTGTTGCTTCGCATCTCTCCGATGCTCTGATAAATGCGTTTAAACCCAGCAGTGCCAATGATGATTACAGTTTTGAAACAGATTTCACTTGAGAATGTCAAAAGACCTCACAAAGTCAATAAACACTGTTACACTTTATCTTTGTACAAAAATGTGTTGTATTCTTAATCTCTTCTACGATACTTCATCAGAGACGACGTCATTCATTTTAACAGGTAAACATTTCAAAAGTATGCGTTCATAGTAAACAAACCTAGGAATTTCAGCATTCACAGATATAGTAAATCAAGAAATTAATGTCATTAAATCAGTGTAAAGGCAGATATGTTACAGAAACGTGGTATTCAATAAAAGCGTGTTATCTGATTATTAGTCAGCATGACTAATCCCTGTGTTTCAGAAACAGATGTGTGTTTATGGTTTATAGCAATTAAGTACTGTGTTAGTTTCTGCATTCTTAAGCCTTGATAAATTTTGAACAAGCTATGTTCACGGAAAGGCTAGGTTAGCTAAAGATTACATTACACTTGTAATAAAAATCAATGTTTATTATGTTTGCTGTTGTATTAGGACAACGATTTTTTTTTTTTCTTTAAATTGTAAAAAAAAAAAATGTAAGGAAAAATGTCTTATAAAATAAATGTACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01926	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan
PF08701	GN3L_Grn1	GNL3L/Grn1 putative GTPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006073	Domain	GTP binding domain	Interproscan
IPR014813	Domain	Guanine nucleotide-binding protein-like 3, N-terminal domain	Interproscan
IPR023179	Homologous_superfamily	GTP-binding protein, orthogonal bundle domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR030378	Domain	Circularly permuted (CP)-type guanine nucleotide-binding (G) domain	Interproscan
IPR050755	Family	TRAFAC YlqF/YawG GTPases, Ribosome Maturation	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11089	GTP-BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf98_23.16 global RNA-seq network