Gene detail

Detailed information of CsqKR_Scaf90_18.10 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf90_18.10	RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER	chr1	36562641	36572473	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf90_18.10

GTGTGCCCCAACTTCAAAAAGTTTGAGAACCACTGGTCTAGGATAATATCCTTAATCTGATGATTAACTGTGCGGGTGAATCTCGTTTGAGATCATTGTACCGAAACGCGATTCACTCGTACAACTTATAAAGAGAAATAATACAATCACAAAATTCTCCTACTAACTAATGTGCACAAAAAACAAAAACAAAAAACACGGATTTACTTGAAATTAAAGAAGAAAAGTTGCCTTGTGGTACTTAAAAGGCTCAGCCAGTTCAGTCTCAGATAGTGCTGTTTGACGGTTTCTAAACAACTGAGTGCTCTAGTGCTCTTTTTAGCGTGAGGAAATGACAAAGAACAAAAATGAATATGGCGGGAATACGAATGAAATAGAAACTTTGGAAAGATGTAAACAACCAAAATATTTTTGTTTAGTAATAATTGTATCTTTTGCAGACTGAACTAGAAATATGTCGGCTCAAGCCACTGCACAGGCAGCAGACGTAACTGAGACAGAAGATGAAGTGTTTGGTCCATTACCAATTGTCAGATTAGAGGGGAATGGCTTGACCAGCAATGATATTAAGAAACTTGAAGAAGCTGGTTTCTTCACAGTGGAAGCAGTTGCCTTTGTTCCAAAGAAAATGTTGCTTTCAATAAAGGGAATTAGTGAAGCAAAAGCTGATAAACTGCTGGCTGAAGCAGCTAAACTTGTTCCAATGGGGTTCACAACTGCTACAGAATTTCACCAAAAGAGATCAGAAATTATTCAAGTGACAACAGGATCAAAAGAGCTTGATAAACTTTTACAGGGGGAATTGAAACAGGATCCATTACTGAGGTTTTTGGAGAATTCCGAACGGGTAAAACTCAGCTGTGTCACACCTTGGCTGTCACATGTCAGCTGCCTATTGACATGGGTGGAGGAGAAGGGAAGGCTATGTACATTGACACAGAGGGGACATTTCGCCCAGAGAGGTTGCTTGCAGTTGCAGAAAGATATTCTCTGTCTGGCAGTGATGTGCTGGACAATGTTGCCTATGCTCGAGCCTACAACAGTGATCACCAGTCTCAGCTTCTTATACAGGCAGCTGCAATGATGTCAGAGTCTAGGTATGCCTTGCTTATAGTTGACAGTGCCACAGCATTGTACAGGACAGACTATTCTGGAAGAGGAGAGTTGTCTGCCCGTCAGATGCATCTTGCAAGATTTCTTCGCATGTTGTTAAGATTAGCAGATGAGTTTGGTGTAGCTGTTCTAATAACTAATCAAGTTGTGGCTCAGGTGGATGGAGCCTCCATGTTTGCAGCTGATCCTAAAAAACCTATTGGTGGAAATATCATTGCCCATGCTTCAACAACCAGATTATATTTGAGGAAAGGCCGAGGTGAAACAAGAATCTGTAAAATCTACGACTCTCCCTGTCTTCCTGAAGCTGAGGCAATGTTTGCAATTAATCCTGATGGAATAGGTGATGCCAAAGACTAAATACATAAAAAGGAAATATAGTCCAGGTTGAGAGGGGAGTACAAAACAAAAGGACTAATATGCAAATACAGATTTCCTCAAATGAAAAGCTGAGAAAGCATTTGAAATCCAAGTTTTATGGTGGATATATATAACCAATAGAAAATATCTGTTGGATATTTGAGTTTAGTGGAGAGGGGAAGAAAGAAACAGAAACAGAACTATGGCAGAAATGTTATTATTTGTAAGATTATGTAGAAAGGAATTTCAATGTGTAAAATGCATACAAAAGAGATTACAGGTTGAAGAATCATTATCTGAAATTTTTCTGAGCAGTGGAAATATTTTAGTTTTCAGATTGATTTCCATGAAACTTTATTTTGTGTATAAAAAGACTAAAAATAATCCTGTTGGCTATTTGTATAAACTGCATATGAAATATAAATGGATCCTATTCTCAGGTTATTTCCTTATATACCAAAATCTGAAATACTTCCACTACCAACCATTTTGAATAAAGGATTCTCAACCTGTAGTTAGTTACTATTGTATAAAATGGTAAAATAACTAATTTGTTCTGTGTCAGAACGTTTTGCTGAACTAATGTAATTTCTAATGACATTAAAACTCGAGACAGATATTGAATGTGATATTGGAGATAATATGGATTCCCAAATTTAGATGCTTTTTCTTCTTTTCCTTTTTTTTTTTTCTTTTCCAAGTGCAAATCTGGTTTTAAAATACTAGATGACAAATAAGACCATTTTCCAGTTTCATTTATCAGTTATAATTCTTTTTTTGTTTAGTAATTAACCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14520	HHH_5	Helix-hairpin-helix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010995	Homologous_superfamily	DNA repair Rad51/transcription factor NusA, alpha-helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22942	RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000150	Molecular Function	DNA strand exchange activity	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0000730	Biological Process	DNA recombinase assembly	Interproscan
GO:0000794	Cellular Component	condensed nuclear chromosome	Interproscan
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0006312	Biological Process	mitotic recombination	Interproscan
GO:0007131	Biological Process	reciprocal meiotic recombination	Interproscan
GO:0008094	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0042148	Biological Process	DNA strand invasion	Interproscan
GO:0070192	Biological Process	chromosome organization involved in meiotic cell cycle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf90_18.10 global RNA-seq network