Gene detail

Detailed information of CsqKR_Scaf90_15.12 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf90_15.12	SERYL-TRNA SYNTHETASE	chr1	36900306	36909288	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf90_15.12

TGCCTCCATTGAATTTTGACATTGATTTGAGTGGAGAACGGTGTTTGCTTTTTTCCTCGCTAAATATTATAAAAGATATAATATTTCGCCGAAGCAGTTTAAAATCAGAGAAAGAAGTGTGAGAACAATTGAAAAAATACTATGATTGTGAAAGAGTTATTACAACTTGTTGGGTCCAGGACTTTTAGACTGCAATTGCAGTTGTTCTCAAGTTCTGCCTATAGACCTAACCACATTCTGCCATGTTCAGCATGCCGCCAGAGAAAAATACATACAAGCAGTTCACAGCTGACTAGTGAACCTCAAGAATGGAACCAGCAATTCCACCTTGACCCTCCAGAACTCAATTTTAGATACTTATGTGATGAATCTAATGCTGCCTGTATTAAGAAGAACATTCTAAACAGAAAAGGAGTTGGTGACATTGATAAAGTGTATCAGCTATGGAAAGATTTCAACAAAGAAAGAGAGAAATCTTCAAAAGATAATCTTTGGCATGAATTACTTCTGGCAGCCAGAGAAATCCCAAACTCAACACATCCATCATCGCCTATTGGAGAAGAGTCTAATGCAACAGTTGTTGAAATTGTTGGAAAAAGAAAAGAATTCACTTTCAGACCTAAAACAGTTGTCAGGCTAGGAGAAGATCTTGATCTCCTTAGAACAGATAATGTTTCCTTGACAACAGGACATAGAACATACTATTTTAAACATGATCTGGCCAAAATGGAGCAAGCTCTAATTAGATTTACTTTGGATACTCTAACTAAAAAGGGGTTTCAACTGGTCTCTGTACCTGATTTGATTCATCCTAAAATCATCGAATCATGTGGGTTCAAAACAACAGGAGAGAGAACACAGGTTTATCGATTGGATCCTGAAAATCATGGAGATGTTTGTTTAGCAGGAACCTCAGAAATGCCTCTAGCAGGATACTTTGCAAATGAATTCTTAAAAACTGAAGATCTTCCAGTAAGACTTACATCTGTCAGTCGATGTTACCGGGCAGAGACTTCTGAACTTCAAGAAGAGAAAGGCATTTACAGAGTTCACCAATTTACAAAAGTTGAAATGTTTGGAGTTACCAGAAGTCACTTAAGTGATGAGTTTTTACTGGAGCTGCTTTCCATTGAAAAGGAACTTTTTACAAAACTGGGATTACACTTCAGAATACTTGACATGCCAACAGAAGAATTAGGTGCACCAGCTTACAGAAAATTTGATATTGAAGCTTGGATGCCAGCAAAACAATTCTGGGGAGAGATCTCAAGTTGTTCCAACTGTACAGATTACCAGAGCCGCAGACTGCACATAAAACATGGAAAGAACAAAAATGAATTAGAACACGTCCACACTGTAAATGGAACAGCTTGTGCAGTACCAAGAATGATTATGGCTATCCTTGAAAACAATCAGCAACAGGATGGAACAGTTCATATACCAGAGGCACTACAGCCATACATGAAATGTTCTGTATTGAAACGACCAGAACATTCCTGTTTGATGAAATTTATCAAAAGCAAAAAATTAAAGTCTAAAAGATAAAATTATTTTTAAATTTGGTTTCCCTGCTTCTGTGACATATTTATACTTAAGAAAGCAGTCTCTTAAATGTGTTACTCACTGCTATAAAACTGATAAAATAATAGCCTGTGTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGAACATGGAGATCAAAATGCACTTTGACTAAAGTTCAGATATGGAACACCTGTTAACAGGAAATAGTTAAAAGGAAACCCCAAGCAGATTCCATTTTCTGACCCATGAATCCTCATATGTCGTCTAACAAATGAATTAAAGATTAGACATAATCCATGATGCACAGACATACAAACATTGCTGAATGTACAATGAGGAAGTATTCTCATTAATTTGATTATAAAAATTACTAATTGGAATAATCAATTACCATTGAATACTATGACATAATTTTTTTATTATTATTACTATTATTATTTCATGAATGCATGAATATATGGGTTTTTTATTATCATACAAAAATAAATAGTTTTTCGAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00587	tRNA-synt_2b	tRNA synthetase class II core domain (G, H, P, S and T)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002314	Domain	Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)	Interproscan
IPR002317	Family	Serine-tRNA ligase, type1	Interproscan
IPR006195	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan
IPR045864	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11778	SERYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0004828	Molecular Function	serine-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0006434	Biological Process	seryl-tRNA aminoacylation	Interproscan
GO:0070158	Biological Process	mitochondrial seryl-tRNA aminoacylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf90_15.12 global RNA-seq network