Gene detail

Detailed information of CsqKR_Scaf89_11.24 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf89_11.24	PROTEIN SIDEKICK	chr11	11795142	11803893	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf89_11.24

GGGATGTTTCGATGTTTATAGGTGAATGTCTTTTTCTCTTCAATTAATAGAATCATGCTTCCAAGCACTAAATCTAAAATAAATAAAAAAAATATATTTTTTTTTATTCAGGGGTCACGGGAAAGCTATTCCGGTCTTTATATCCGGAATACTCAGTTTAGGCATGCTGGGAAATACGAATGTACGGCTCAGACAGTTCGAGACGCAGTTTCGTACGGCGCAACACTTACTGTTCTCGGACCGCCGGGTGAACCTGCCGGCGTGTTTGCCGATGTTGACGGGACGTCAGCGACAATAACGTGGACAGCAGGGACAGATCATGGCAGTCCTGTACACAGTTTTACAATAGAATTCAACACAAACTTCAACACGGAATGGAGATCATTAACAGAACGTATTCCATACACTGACTCCCTAGTAGATACCAGTAAACACAGATACACCGTCAGTCATCTCAATCCGGGTTCTTTGTACTCGTTTCGTGTCGTCCTCGCAAACTCGTTCGGGTTCGGAACACCGAGTCGACCGTCACCTAAATATAAGATTGCAGATGCTGCCCCAGTCAACGTAGCACTGGACGTTGGCGGTGGAGGGGGCTCAGTAGGCACACTTGTCATCACGTGGAAGCCTCTAACTCCTGAACAGCATCACGGGAAGGGCGTAGGATACCGAGTTTACTGGCGGAAATACACGATTAGCGACAGTCTTTGGCAACAGGACAAACTGGCAGGTCGGGTCTCCAAATACACGACTGTTGTTGGAGTCGAAAATTATTTCACTGAGTATGAAGTGAAAGTCGCTGCCTTTAATTATCTCGGCCAAGGACCTAACTCGACAACAACCATAATAATGTCAGCAGAAGACATGCCCCTCTGTACTCCACTCAACGTGTACGGGGACTCTGTCAACTCGACGGCAGTAATGGTGTACTGGGGTCACTGTCCTGATACTCGGGAAATGATGAAGGGTCGTGTCCTGGGCTACCAGATTAACTTTTATCTTGAAACTGACGATGAAATTTACATGGACTCGATTTCGCATTACGGACAGATGGACAGTGGAAATATTATCGGCTTGTTGCCGGACTCAGACTACTGGGTGAACGTGCAGGTGTTCAATACGGCCGGGTATGGACCGAGAGGCGAAGAGGCGCGAGTCAGCACGTTCGCATACCCACCTCTGCTCTACCCTGAGTACGTCGAGGTCCACTCCCACGGGCCTGACAGTGTGATCGTGTCGTGGCGAGGAATTAGTACGTCTAACACAGAGGAACCCCTCAAGGGATACAAAATACGCTACTGGAAAAGTCACGAAAACATTCTGACGGCTAAAGATGTTTCCACCAAGGAAAAGGAGACGTTTGGAGTCATCACAGGAATTGAAAAAGACTTCGTTTATAACCTGCGCGTGCTCGGCGTGTCAAATGGAGGCGACGGGAAGAAAAGTCCCACTGTATTCTTCACGTTAGAGGGACAGATTCGTTACGATCCCTCGTCAACAGTGATATTAGCCAAAGGGAGTGAACTCTCTTTTTCCGCAACTTGCTTCTTTCTTGGAGTTATCTGTCATTTCGCTTTGCTTTGAAATTGTCACCAGATGGCGGGACTGTGCACGATTAACCTCTGGCGACCTCTGACTTAGCAGACGCCGGCTTCGTACGAATAAATCTTTAACAATAAACGGGTCAAAATATGAGCCCGTATTCAAGAGAAAAATGAAGAAGAAGAAAACAGTCCTTGACGTAGTAAATAACAAGTTTATTTCACTTATTGTTTTCCGTGCTGTTTGCTGTAAAGTGCTATTATAAGCTTAATAGTTCCCATGCCGCCTCGCTTTATGGAGATTATGGTTCTGAAGTTAGCTAGCCGATGATTACTGGTTCAAATCTTGCGAGTGGAAACGACGTATTGAAACTACTCCAATTTATTCAGACGAAACCTCAGGCATAATTGTTATTTTATTCTGAATGTTTGTAAACACTGGATCTTCGGAATTCCGTTATACACGGGAAACGGTTTTATTTTTGTTTATTTTATTTTATTTTATTTTATTTTATTTTAAACATTAACTTTTTGAATTCCAACGTTTTGAATTCCGATGTAAGAAACAGTGAGAAAAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961	Domain	Fibronectin type III	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44170	PROTEIN SIDEKICK	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0030424	Cellular Component	axon	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf89_11.24 global RNA-seq network