Gene detail

Detailed information of CsqKR_Scaf87_12.42 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf87_12.42	ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 15	chr5	5242109	5249680	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf87_12.42

CGATGTTGACAATAATTTCGCTATCTTTTGACTTTCGATCTAATCGTTGATTTATTTTTATTTCATTGTTATATATTTGTAAAGTTAAAGCATATCACAATACACAATGGAAAGTAAAAAGAAGTCTAAGGACGAGATTGAAGAGTATGTCGACAAACTCTACAAAGAACACCCAGATAAGTTTGCTGACTTTGCTGTCGATATACAAGATAAAATGGCACAGAGTATTGGGCAGGAGGACAAGATTCGCAAATTGCCAATGGAGGATACCATCTGGTTCATCGCAGAACAGGAAACTGTTGTTGATGATGATGGAGTCACACACGGTATGTACAGATGAACGACAAGAGGGGAATGGGTTTAGGAGTCAACATGGCTGACCCAGCTAAGAAGACGCTGAAACAGCAAGCCTATGAACTGTTCTGTTACTGCTGTCTGTTTCCTGTGCAGAAATCACCACGACGTCCTCGGATTGTCACCTATCAGGACAAATCAAAAATCAAGACAGAGGGAGTGCTAGATCTCTCTGCAGTAGGAGTCTACTTTATGAGTCCAGGATTTGGTCCACCACTGTCAATGAATGAAATCTGGTTCAGGCAGTGTAACATGTGTCCAATGAAGGGAACTCCTGACCTGTTTAAGAAATGGTACGAACTTGATTTTGTTACACTGAAGTATTCTAATTCATCCTGTGATGCTATCATCTACTGCTCTAAGGAGTGTCAGAAACGAGGCTGGTCTCAGTCAGGAGAGATGAAACATCACAGTCACAAACTCTGGTGTGCTCGCATGAAGCAGTACATGGCCAAAACTGATGAACTTGCTAAATTTCCTTTCTCTTATGCCGCAGAGACCACTAGTCTCAACTTCCATGTGTTGGCACTGAAGAACTTTCTGGAGAAGCATGGTGTTTACAACAAAGGAATGTGGCGACGTGAATGTCTTCTTTGGTCTCAACAAGGAAATGACATACCCTTTGGGGAGCTGAGTAACAGTGACAATCCATTTGTTCTGATAAAAGAAGGAAACATTCTCAGTGTCAAACCAGACCAGGATCCTCCAGGCATAAGCAATCCATTCACTGATTGGCTGGATTATTACAAGTTCCGTGGATTTGAGCTGGATTCTCCAATAGCAGCACTTCTTAGTTTTCCCCTCACTCTGTACTACATAGTAACATCATGTTTTAAATCTGATTATCCTGATCAGTTACAATCAAAGCAAAAATTAGTTATACACCTTCTCGGTGTTGAGAAAGAAGTGGAGATGTTTGCAGCATTTCAGGAATTTGCAAGATTACTTCCCTCAAAAGAGATTCAGATAGACATGGTTGGAAATGAGATCACAAAGAAAGCAAACATGAAGAAAAGACAACTGGAAAATTTAACCATCACCATTCACAGGGGTCTGTATCACACACTCACTCTGGACAAACCTGATATTGTAGTTGGTTTAAATGCAGGTATTGGTGCCTACATAACTTGGGGAGATACTTTGAAAAAACTGAAGATGGATAATATACCAGTTTATTTCACTGATTATTGTCAACTTAGCTGTGAATATGCAAAACAAGCAATGGAGGGGTTAAACGTGGGTTCTACGTCGGAACCATTCATTAATCCATTCCGCAGTCCACTGAGGAAAGTGTGTGAGGAGAACAACATGCCCTGGTACAGCAATGCCTTCATTTACAGACTGACATACAGCTGAGAAAACACTGAAAAATATTCAACTATCACAGCACAAAACTACACAACAAAATGTTTATCTATCCACTTTAAAAAAAAAAAACAAAATAGTACCCTTTGAATCACAGTTCAAAGGATAAACAAGACTGCTTTGTGTACATCTTTATTAGTAGATGAGCGAGAGAGAAAAAAAATCACGTCCTTGTACTGTTATTTTAATCTCAGTACTCAGTTTGTGTATAACATTTTACCTGATGTGTTTTTTGTAATTTAGTGACTCATTTTGATTTGATAGCTGGTGAGTTTAGTAACTCAGTCTGATATGATTTTTTTCAAAACTCTGGCGATCTTTTGCATCGTGTGAAGACCGCAAATTATTTTATTTCAGATTCAAAGACACATTTTAATTATTTTCATTGAAATTAAGTTATAAACAAAAACATTTCACATAAATAAACAAAACTATAGTAAAACAGTAACTTAGTGTAAAGGTAAATAAATTAGTAAAGAAGGTAATAGTTTACAATTAACACATCATTAAATGAAATGTAACTTGATGAAGGAATAGGTTTTTGTTTATTGTTAATTATAAAATAAAAATAAAAATGTATTTAGTATGTCGTTTATGTTTGTCTAAATATGAATAATGCATTTGTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20179	MSS51_C	MSS51 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002893	Domain	Zinc finger, MYND-type	Interproscan
IPR042989	Family	Zinc finger MYND domain-containing protein 15	Interproscan
IPR046824	Domain	Mitochondrial splicing suppressor 51-like, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47085	ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 15	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0042826	Molecular Function	histone deacetylase binding	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf87_12.42 global RNA-seq network