Gene detail

Detailed information of CsqKR_Scaf7_7.27 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf7_7.27	OXIDOREDUCTASE HTATIP2	chr9	1644347	1650902	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf7_7.27

ATGCGTACCTGGGTGGAACAGTCAGGGACTAAATTTGACAGCAAGGGTAAACACATTTTAGTGACGATGCAGTTTTTGTGGATCAAGTGCGAGGATGTATTGCCTGGTGTGGGAATAGGTGTTCTTGTACTGGCTATGTTTATGGGAGCTTTTTTGTTCTACCACGAAGTGCAAGATTCACCAGAAGTAGAACGCAATTGCAGAATGGCTGCTGAAGCAACTAACAACTCAGAAGAATTCAAAATGAAAGGTCACTCTGCGTTTATTGTTGGCTATACTGGAGCAGTGGGGAAAGTTCTTACAAAAGAACTAGCAAAAGCCAAGTTGTTTAAAAAAGTGTTTTTGATTGGTCGCAGACAGATAGATCTGGGCAGTGATGTGGGTCCTGAATTTGAACAAAAGACTGTTGATTTTGAAAAACTTGATGACTATGCAGAATTATTTAAGGATGTTGACATTGGTTTCTGTTGCCTAGGAACCACAAGAGCGAAAGCAGGACCACAAGGATTTCTTCGAGTGGATCGTGACTATGTATTGAAATCAGCTGAGCTTGCTAAAAATGGAGGATGCGGACATTACAATTTTGTATCAACTAAGTCAGCAGATAAGAACAGCTCATTGTTGTACACCAGAACAAAGGGAGAAGTTGAAGAAGAATTAAAAACTGTTAATTTTCAGAGACTGTCAATCTTCAGACCAGGAGTTCTTCTTGGCGAACGTGAAGAAAGTCGACCTGGAGAAGCTCTTGCTAAGTTTTTGTTAAAACCTGTCTCGTACTTGTTCCCTACAGCAATTACAACACCCACAGAGGTGGTTGCCAAGGCAATGATAAATAATATGCTTGCAAAGGCAGATCGTGCTGTTGAGCTTTACGAAAACAAAGCTATTCATCAACTCTCTGCCATTTCCAAAGGTTGCTGAACCAAACAAGATAATTGAAGAAGAATTAAACATTTTTGGTCTCTCTGAGCAAAAAAGATCTAGTGACAAAAAGAAGATGTGAAAAATCTTGATATAAGCAGTAAAACTTTTGTTTCAGAACATTGTGAAATTCATCTGCTTGTTAGAAGACTGTAAATTTGTTTGAAACCAAAATAAAGAAAACTAAATGTAGAACTATCAGTGGTGGAACCTAAAACCTTTAGACTGAAGTTTCAATTTTTTTTTTTTCATCCAGTAAATCCAAAAATAGTTGATTAGAAAAAGAGAAAAAGAAGATATGAAATCAACCATCAGCAGACTAAGAATTTATATTTATTACTGTTAATGTATTTTGTCATTATGAGAGCAGCTTTTCATAAAGTTGTTACTGTTTCTTTTTTAAATTAAAATTTAAACTTTTTAAATTCATTTTTCATTCTGTGAAATTTCTTAATACTCTCTACACTTGTAATTTTCATTAGAAATCCATCTGTACACATTTTTATAGGCAGAAAATATAATTTAAAAATGAAGAAGTCATTTTATAATTAATCATTGCATATTACGTTCTGTCATTATTCCTGAAGAGTATGAATACAATACTGCTTCTTTTTTCTTGAAAATTACATTCAAAATTATTATCATATACTGGGTAAAACGTGTTTTCAAAAATATTCATTATGTTGATATTTTAAAGTTTAATTGTTAATAAAACATCAATAAGTATATGGTACTATTACGGTGAGAAGTATTTTACAATGTTCAAATTATCTGTGTTTTATTTAGAATTCAGGATACTGCATTGCTGCAGACACTGGTGTTTCTGAAAGGTGGTTATGTCTAACAGTGTGTTCTTTGCCTTTAGTTTATTAATAATATATATTTTTCTTAGTTTTCATTTATTTTGATGACATCTTTATTATTTATATTATATACCTGAGATAATATATTCTTTACATTTACTTTTATTATTATTAGTTGTCAATGTATATGTATATATATTTGTATGTCTGTTACTTTATAACATATCATTTATAGCAGTCATTCTTTTCCATTAGCTTTATTAAATACATAATTAGTATTCATATGTTTTTAAATATCATACAAACCAAACTTTTTGTCATTCCAGTACCTGTAGATTTTATTCTTTACAACCACTGCATGATTTTGTTTTGTTTGTAGTAGTAATTTGTGGCAAAAATATAATATTTAATGAGTTTGAAAAAATGATTATGGTGCATGGGTAAATTAATATATGCACTCTTTTTTACGTTTAATAATTAAGATATTTGAAACTAAAGAGTGAAAATAAGAAAGTTATATTGTCATTAACTATTACACATTAATCCTACTAGTACCCATTGGAATTTAGAGAATCAATAATTTTTTTTTTTTAAATGTATTGTTGACTTTCTCCACTGAATAATGTCAAATCAGGTTTACATTTAGCCAAATTTTTAATGTAATGCAGCTATCCAGTGACATTGTTTCAGTCCATAGAATTAGTAGATTAAAAATCTGACATACTGACAGCAGCTACATTATTTGTTGATATAGTTTTTCATGATAGATTCTTTTTGCACTTTAAATGAATGAAAACATTTTAATATTGGAACTATTTAAACTGAATCTGGTTTTGTCCTTGTTCTTTTTTCAGATACAATTCAATAACTTTTTCATCAGGGAAGATTGAAGGAGAGCTATAGTTTTCATATGTTTTAATAGATATTAAGAAAAATTGTATCTTATAATTTCTAAATTTATATGTTGCATTTGCACTATTCTTATTTACAGAACTTTGTAGATTCAAATTGGCAAATTTTAAAATGGTATATTATTTATTATACATTTGGGTATTTTTTTTATCTTATTATAAATGTCTTAATTAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01118	Semialdhyde_dh	Semialdehyde dehydrogenase, NAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000534	Domain	Semialdehyde dehydrogenase, NAD-binding	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14097	OXIDOREDUCTASE HTATIP2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016620	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan
GO:0051170	Biological Process	import into nucleus	Interproscan
GO:0051287	Molecular Function	NAD binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf7_7.27 global RNA-seq network