Gene detail

Detailed information of CsqKR_Scaf7_7.24 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf7_7.24	CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE	chr9	1635991	1643882	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf7_7.24

GTCAAATTAAGGTCATTCCATGATTTTCATTGGTGGACAGGTGTCACACCTACCATTTGGACTACGAACATTGCTAGAAATGGAATCAATGAGAAATGCATTTCGGTTGCTTGGATATGGTTTGAAAAACAAGTCAGTTACGTTAAACAGTCGGGCGACCTCAGCTTCCTTTGCTGCTACTCGAGAGATTCTTGACAAAGAACTTCAGGACATCCGAGAGGCAGGAACATGGAAGGCAGAAAGAATAATCACCTCACCCCAGGGTTCGAACATCAGTGTGAAGGGACAAACAAAAAACATTCTCAACTTCTGTGCCAACAACTATCTTGGGTTATCAAGTCACCCAGAAGTTGTGGAAGCTGGGAAGAAAGCTTTGGCAACTCATGGTGCTGGACTCAGTTCTGTACGATTCATTTGTGGAACTCAGGATATTCATAAAGAACTGGAAGAAAAAATAGCCAAGTTTCATGGCCGAGAGGATGCAATATTGTATGCCAGCTGTTTTGATGCTAATGCAGGAATATTTGAAGTTCTTCTTTCACCAGAAGATGCAGCCATGTCTGATGAACTGAACCATGCATCCATCATTGATGGTCTTCGACTCTGCAAGGCCCAAAAGCACAGATATAAACACAGTGACATGAATAATTTGGAGACAATACTCAGTGAAACACAGAATCTGAGACAAAGACTCATCATCACAGATGGTGTTTTCAGCATGGATGGCAACGTTGCTAAACTCAAAGATATTTGTAAGCTGGCAGATAAATACAAAGCAATGGTGTTCATTGATGAATGCCATGCTACTGGTTTCTTTGGACAAACAGGCAGGGGCACAGAGGAACATCATGGGTTAGAAGGAAAAATAGACATAATTAACTCAACTTTGGGAAAAGCTCTGGGAGGAGCAGCAGGTGGATACACTGCAGGTCCCAAGCAGTTGATTGATCTTTTGCGTCAGAGGTCACGACCCTATTTGTTTTCCAACACACTTCCTCCTCCTGTTGTTGCATGTGCAAGCAAGGCACTTGATTTAATCATGAGCAGTCCTGATTTACCAAAACGAGTCCTGACAAACACAAAAAGATTTAGAACTAGGATGGTAGATGCTGGTTTTACCATCTCAGGAGACCCAGAACATCCAATTTGTCCAGTCATGCTTGGTGATGCTCGACTTGCTAACACATTTGCTGATGAAATGCTGGAACGTGGAATTTATGTAATTGGGTTCAGCTTTCCAGTGGTTCCGAAAGGCAAGGCAAGGATAAGAGTTCAGATTTCAGCATCCCATTCTGACAAGGACATTGATCGAGCAGTTGATGCTTTCATTGAGATAGGAAGAAAACTCAAAGTTGTATCCTAAAATTATTGTAACATTCACAAGTTAATCAAAATTACATAAACACTGAAGAATGGAGTTAATGAAAATAGATTATAAATGTGTATGTCACATGTCAGAAATTTTAAAAAGAAATTGCAATGTTTTTATAAAAATGTTTAATATATATTGTAGTACTGCAAGACCAGTTGTAATGAATCAGAAAACATAACAGATTAATATATAAGTATTAGATGAACCAAAGTAACCATTTCTCAGGATAGACTATAGTAATATAATTGACTGAAAAAAGATACAAGCATTATTTTGAGAGTAAGTGGTAGTTTTTAATTGGTATGTGGATTTGTATTTTATTTCAGTCCAAGCTACTTAAATTTAGAAATGCCTGCCTTTATTTTTTTTTAAAGTATTAAAACACACATAGTCATTCCAATATCCTGTGATCATTGATATTTGATGTTTCAGTTATCAGTTGTTTTCTATATTGTGCAAGTATTGGATAAAAGACTTGTAGTCACATTACGTAGCGATAACTGAATCAAATTTTGAAATACCAAAGTTTTATACTGAATTTTTTTATTTTGTTTTTTTCATTTTTATCTAACAAAATAGTATATTAAATTTGTAAACTATAACAAGAAGAAAAAAAAAAGAAAAATCAAACAAAAGACTTTAATATTGTTTAGACATCAGAATCTGACAACAGATAATTCTGAAAAAAGATATATTTATCAAATAGCTGTTAATCATTCAATTTAGATTTCTAAATGTAGACAATATTTTACTGAATCTCAAACCATGATTAATTTATACATTCCATACTTTAAGATAGTTATGTTTTTTAAAAAATGTATTTTTAGATACTAACTTTACAATGGTGTTGGTTTATCTGTAGATTTATTATTATCGTATTATTATGGAATCTCATGGGGCTTTTTGTGAGTTTATATATATATTTTCATTGTTAAAACATCACATTTATGTTATTATTGTTTTCACAAGTTTTATATATTTTCCCCACTACTACTAAAACAGCAACATACCTAATACTGTAATATAATGTTAAACATTTTTTTTTTATGAGTTTTGTATTTAAATCATTTGACAAATCAAAGCCTCTACTTAGTTAAATCATGTTAGCTTGCTCTGTTTTTGGGATCATTCTGGTTGCAGGGTTACTATCACAAACACTCATTCCAATTTATTTTACATTTATATATATACATACTAGTTTATATAATCATGCTTTATATGTTTTTAACGAGTTTGCTTTGTGTTGCAGTGATAATATATGTATCAAAACTGTGTTTAAGAATTTTTGTGAGACAGGAATCTCAAAAACAGAATCTCTGTTTCTGTTTATTTGTTTTGGTTTTTAAATTAATTATTTTTTATTTGAGATTTGATCATGACACGTCTAAACTGAGTAATTAGTGATAATAAAATTTACATTTACAAATGATGTATTCTGGTTTTGTTGTTTGTTACAGTATACATGTGATGGCATGAATAAATAAATAAATAAATTTACTTCCATGTTATTGTTTTATGATACCAAACTTCGCCAATAATAATGAAAAAAAAAAAAATGAAAAAAAAAAAAAAATTAGATGCCACTTTTTTTGTCGGTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001917	Binding_site	Aminotransferase, class-II, pyridoxal-phosphate binding site	Interproscan
IPR004839	Domain	Aminotransferase, class I/classII	Interproscan
IPR011282	Family	2-amino-3-ketobutyrate coenzyme A ligase	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR050087	Family	8-amino-7-oxononanoate synthase class-II	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13693	CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006567	Biological Process	threonine catabolic process	Interproscan
GO:0008890	Molecular Function	glycine C-acetyltransferase activity	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0016740	Molecular Function	transferase activity	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf7_7.24 global RNA-seq network