Gene detail

Detailed information of CsqKR_Scaf7_7.16 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf7_7.16	OROTATE PHOSPHORIBOSYLTRANSFERASE	chr9	1668175	1674063	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf7_7.16

ATTGGAAGAAAATAGAGAAAACGAACAAATATGGCTGCGCACTCAAGTATCAACTTGATGACTATCGACGAACTTATTTTGAAATTATTTGACATTCAGGCAGTGAAATTTGGATCATTTATTTTAAAAGCTGGAATTGAATCACCTGTCTATTTTGATCTGCGTGTTATCATTTCACATCCACATTTGATGTTGAATGTTGCTGATTTTTTATGGGAGACATCGAAAAAGGCAGATCAGACATTTAAATCTCTATGTGGTGTCCCATACACAGCACTTCCCCTAGCAACATGTATTTCAGTGAAACACAATATTCCTATGTTAATAAGAAGGAAGGAGGCGAAGGATTATGGTACAAAGAAATTAATAGAAGGCCAGTTTGAGAAAGGGGAAAAATGTCTTATAATTGAGGATGTTGTCACAAGTGGCACCAGTGTTATGGAAACTGTAGAAGCACTGAAGAGTGTTGGTATTGTGGTGACTGATGCCGTTGTCTTACTGGATAGAGATCAAGGAGGAGCAGACATGCTGAAGAGTCAAGGTGTCACTTTACACAGTGTTTGCAGTCTTACTAAGGTGTTGGAAGTTCTGCAAAAAGCTGGTAAACTTAATAATGAGATGGTAAAAAAGACAATGGATTTCATTGGTCAAAATAAATTTGAACCAATCCTGTCTGGCAAAAAAATGGTCGCTTATAATGCAAATAACAGTGACGTGTCAAACAAAAAAAGTAAAACGTTTTTAAGATTTAGTGAAAGAAAAGAATACTGTCACAATGCAAATGCCAAAAAGTTATTTGAAATTATGGAAATGAAAAAAACCAACCTAGCTTTCTCAGCTGACCTAACTACAAGTCAAAGCCTCCTGATGGTAAATTCACCAGTATTAATAATAATTCAAGAAAAAGGTATATTAAAAATAAAATTTATGGTAATAAAACACATTGTATATATTTTTAATCTACATTTATGTGGCATCATTCATTAAATTAAGAATCATAACAATAATGAGAGATATTGACAGCTACTTTATCATTTGTTTTTCCTCTTAAGACAATTTTTATAAAGATCATATCTATAAATATTTTAACCTCTTCTCTGTTGAGATGGATGTCATTGTGGAGGCTGACAATACTTGATAAATGAAAATTTGAAACAATACACCAGAGATTTGGCTACAGAACAGAAGTCATCAAAATTGTGGTTATAAAGATAAATTAATGTTTAAAGTATATAAATATTGTTTTCTTATGGTGTTTTTTTAAGTAATTTTTTTTGTCCAATATAGATGGTTGATAGTGTTGGTCCACACATCTGTATGGTTAAAACACACGTGGATATTTTGGAAGATTTTACACACGACTTCATCAAACAACTAAGAAAACTTGCCAAGAAACATAATTTTCTCATCTTTGAAGACAGAAAATTTGCTGACATTGGTAACACTGTGAAGCACCAGTACAGTGGTGGAATTTACAAGATCAGCGAGTGGGCAGATATCACAAATGCCCATGTTGTTCCCGGAGAGGGTGTTGTGAAAGGGCTAAAAGAGGTTGGAATGAAAGAAGGAAAGTCCTGTGTTCTAATTGCAGAAATGAGCTCTGCTGGAAATTTAGCAAGTGGTGATTATACAAAAGCATGTGTAAGAATTGGAGAGGAAAACAAAGATTTTGTCATAGGATATATCTGTCAGTCCCAGGTCTCAGCAGATCCAGCTTTTATTCATATGACTCCAGGTGTTCAGATGAAAGAAGGCAAAGATAATCTTGATCAGAGTTATTTGACCCCATCGCAAGTAATCACTAATAACCACAGTGATGTTATAATTGTTGGTAGAGGAATTTACAAAGCAGATGATCCTGTAATGGCTGCCAGAATGTACCAAGAAGCTGGTTTCAAAGCATATGAATCTCAGTTTCATTAATATATTGTTGTTCCTAATAGTAGATAATGTATTATGCAATAAAAATGTACTTAAAGCATTCGTATTTCTTTTTTTTTGTCAGTAATAAAATATAAACAGATA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00156	Pribosyltran	Phosphoribosyl transferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000836	Domain	Phosphoribosyltransferase domain	Interproscan
IPR004467	Domain	Orotate phosphoribosyl transferase domain	Interproscan
IPR023031	Family	Orotate phosphoribosyltransferase	Interproscan
IPR029057	Homologous_superfamily	Phosphoribosyltransferase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19278	OROTATE PHOSPHORIBOSYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004588	Molecular Function	orotate phosphoribosyltransferase activity	Interproscan
GO:0004590	Molecular Function	orotidine-5'-phosphate decarboxylase activity	Interproscan
GO:0006221	Biological Process	pyrimidine nucleotide biosynthetic process	Interproscan
GO:0006222	Biological Process	UMP biosynthetic process	Interproscan
GO:0019856	Biological Process	pyrimidine nucleobase biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf7_7.16 global RNA-seq network