Gene detail

Detailed information of CsqKR_Scaf7_31.38 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf7_31.38	NITRILASE-RELATED	chr9	4024844	4032399	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf7_31.38

ATCTGCGTTTAGCACATCCCAAGGTAAACGATTTATATGGTTCTTTGAGGATAGGAGGGAATTACTTAGTAACATGATTATAAATAATTCGTAACGCTCTTACTGTGTCATGCTTTATCTGAAGTGAAATAATATAGAAACTGAATATTCCAGAGACAACGTGTCACTGGGATCTTGATTGTATTGTCAATGAGTGCTGTTAGTGTCACAGTTGCAGGCAGAAAATTACAAAAATTTGTCACACATCTTTATAGACAAAAAAGAAAAATGGCAACATTGTCAAAACTGAATCCTGTTGTTGCAGTCTGTCAGATGACCAGTACTGGTGACAGAACCACAAACTTTGAGACTTGCATCAGTCTTATAAAAAAAGCAAAGATGAGAGGTGCTAAGATGGTATTTTTACCCGAAGCATGTGATTATATTGCTGAATCTAAAGATTTGTCTGTACAAATGGCTGAGCCACTAGAGGGCAGCACAGTGTCAAAGTTCAAGCAAGCTGCAGTGGATAATGGGATGTGGCTTTCTATTGGTGGAATTCATCAGAAGGTATCAGACACCGAAAAGAGAGTTTTAAACACACATTTAATTATCAGCAGTGATGGTAAGATAAAAGCAACATATAACAAAAGCCATCTGTTTGACCTTGACATTGCTGGTAAGGTGAGGCTGAGTGAGAGTGACTACACCATCCCGGGAAAGCAGATAACACCACCAGTGGAGACACCTGTTGGTAAAGTTGGGCTGGCAACTTGTTATGATTTGAGGTTCGCAGAGATGTCAATAGCACTGGCACAGCAGGGAGCAGATATTTTGACTTTTCCTTCTGCATTCACACAAACCACTGGCATGGCACACTGGGAGGTTTTACTTCGTAGCCGGGCTATAGAAACTCAGTGTTACGTGATTGCTGCAGCACAAACTGGCAGACACAATGCAAAAAGGTCCTCGTATGGTCATGCCATGATAGTTGATCCTTGGGGATGTGTGATAGCTCAGTGTAAAGAAGGTACAGATGTCTGCACTGCTGAAATAGATCTAGATTATCTGATGAAGATTCGCCATGAAATGCCACTTTGGCAGCATCGCAGACATGATTTGTACGGCCACATAGTCACATCAGCCAATGATAATATTGACAGTCAAGAGACTTACAAGTTTGGCCAATATGAAATCAAGTCAGCCCATGTTTTTTACAAGACAGCATTGTCCTATGCTTTTGTTAACATCAAACCAGTTGTCCCTGGGCATGTTTTGGTGACATCATTGAGACCTGCTGAGAGGTTTGCTGAGCTGACTTCAGCAGAAGTTGCTGATGTATTTTCTGCTGTTCAGAGAATTTCCTCTGTGATGGAGAAGCACCATAGTTCCACTGCTCTAACCATAGCAATACAAGATGGAGCTGATGCTGGGCAAACTGTAAAACATGTACATGTTCATATATTACCAAGAAAACCTGGTGACTTTGAGAAAAATGATGATATATATTATGAGTTGCAGAAGCATGATGCTGAAATAGATATGGAAACAAGGAGGAATTTAAGATCAGAAGAATCAATGGAGGAAGAGGCAAGAGAACTGAGAAAAAAATTCAGATAATCGAAGTCACTCTACAAATAACCTTGTTTATTATTATTATTATTTTCATCAGTGCTTTTATTAATATTATATTATTACTTTTATTGCTACTACTTGTATTTTGTATTTGTTGTTGAATGATCGGTAATATTGTTTTATATGAATTGTGACAGATATTGTTTTAAATTAGAAATGAAGAATTCTTTACCATATGGTTATTAATAACATTAGTAATAATAATAATACAAAGATCAGCAACAACAACAATTACAACAAAAACCCAAAACCAAGAACTTTGTATAATTAATATCATGTTTACAGAAGAAGTTTACTTTTTAACCAGAAATTTGAAAGAAAAAAGAAAAAAAAAATGTTAAAGATTCAATATATATACTGGATACTGAATAAATTATTTAGAGAAGTTTTCTTTGTACCAAAACTACATAATTAGATTTAATAGCAAGAGAAGCTTGGATGAATTCCTTGTTATTTATAATAATACACTGTGAAACCAAACTGAATGTTGCTACTGCAGTGGTAATGGCAAAAATATCATGTTGAGATGAAATTTTAGATGACAATATATTCAGTTGAAATGAATCAATCCATTCTGTTTTTCCCAAATCAGATTTGTTTACTGTAAAATGTCTTTTATATATATTAATTGTAACCCTGTTTTTTCATGAGACATGTTTCAATAATATTCAGTTTGCTGATTTTAAAGACACATTATTTAAAATCATAACAAACAAAACAAAAAATAGTTAACATGTTAAATTAAACAATCATAAATATATAACAAATATTTTCTTCCATTATAGTCGGTTGGTTTTAAATAATATCAGTTAAAATAGACAAAAACATCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00795	CN_hydrolase	Carbon-nitrogen hydrolase	Family	Interproscan
PF01230	HIT	HIT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003010	Domain	Carbon-nitrogen hydrolase	Interproscan
IPR011146	Domain	HIT-like domain	Interproscan
IPR019808	Conserved_site	Histidine triad, conserved site	Interproscan
IPR036265	Homologous_superfamily	HIT-like superfamily	Interproscan
IPR036526	Homologous_superfamily	Carbon-nitrogen hydrolase superfamily	Interproscan
IPR039383	Family	FHIT family	Interproscan
IPR045254	Domain	Nit1/2, carbon-nitrogen hydrolase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23088	NITRILASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0006807	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0016811	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf7_31.38 global RNA-seq network