Gene detail

Detailed information of CsqKR_Scaf78_0.3 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf78_0.3	DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5	chr15	469523	481108	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf78_0.3

GGCTGAAGAAGATGATCCAGTGGAGCACGAGATTAATGTCTTTCTCTCCAAGAGTTTGGCAGAAAATCTGTATTTGTTACAGTATCCAGTGCGTCCTGCCTACATGACTTACGACCACATCACTCATTTAACATCTCGAATAAAACCAACACAGAAAAAGGTTGAGATAGAACTACATATTAACTCTAACAGTGCTAACTATGCAAAGACTAAAGGAGAGCAGATTGCTATTAATGTAGATGGGTCGGCAGGTTCGCACTCACAGAATGTCATGTATCCAAGTGGACTGATGGACAAGCAGGTTTTAACGTCAGCTCCAAGTACGGCCAGTACAGCAAGGTACGCAGTGGGATTGCTGAAAGATGAAGAGTTGCACCTGACACCTATAAAGGCAGTTGTCCAGATGCGGCCGAGTTTTTCCTATCTGGACACAGTGGACAGTCGTGTGAAGATGGACACTGGTGGGGGGGATGCAGAACTGTCGCAGGAGGAGGTGGAGGACGATGCTAAACCAGTCACTGTGAAGTTCTCACGTCCTGAAAGTGACGAAGCCAAGGCGAGGCGAATGGCCTCGTATGAGTTTCACAGGCGAAGGTTCGACGGTGAATCCTGGGTCCCTTTAGAGTTCCATGGTTTGGATGATGACATGGCTGCGTCTGAACGTCTGCTGCTTCAGGCGACTCATGGAGATGATTTGTCTGAGTTCCAGCTTCCTGCCACTGAGTACCTCACTCGACTGGTTCCCCCACATGTTGAGGAGAGAGAAGAGAAACCGGAAATGCCAAGTAACATTCTTTCCTTGAGCCAGCTTCGAACTCTGCCACTAGCAGACCAGATTAAAGCTTTACTAACAAACGTGAAGGTGATACGGTTCAGTCAGTTGATGTCTCTGTTACCACAAGGTACGGACACGGTCAGTGCACTCAGGTGTGTCCAGCAGGTGGCAGTCCCTCGTACAAGGCTGCTGGGTCGTTAAAAGTGATGTTTTGTATCCCAAGGAAGCGAGCAGTCCACACAGTGGAGTTTCGTCTGAGTACCTGTGTAGAGGCAGAGACTACATGATGTGGAAATTCACCCAGTCAAGATACGTGATAAGAAAAGATATTTCTTCAGTTGTTAAGCTGCCAGCAGAAGATGTGAAGGACATTCTAGAACAGATGTCAAAGGTCAAGGCCAGTAAAGGATGGGAGTTTTTGTTTGAGTATGACAAAGAGTTCACTGATAAATACTGTGATGTTGTTCAGCGACAGAAGATGCTGTGGGACGCCAAGTTCCAGTCTCTCAGTAAACTCTTCAAAATTCCAAAAGAAGCCGAGAAAAAGGCAAAAGCTAACGAGACGGGACAGACAGACAAACCAAGGAGACGGCGGACGTCTTCAAAGTGTTCACCCAACAAGCGTGAGCGGACGCTGAGTGGACGCTCGTGTTCTGACCACAGCGACATGGAGCTGGACACAGCAAGAACAGAATGCGCTAGAAACATTTCTGCTGCCCCAGTCAGTATTACCATTGAACCAATGGAAGTGTGTGATTCCAATCATGTGACTTCAAATGGACCAATCAGTGAATTGACTAATAACACAGACAGCAGTAGTAAGTGTACAGTGGAACTGAAGCAAGCTCTCATCGGGTTTTGTCGAGATATTCTCAAAGAAAGGTTTATTTTTCCTTTCCGTGAACTGAAACGTTTGTTTGTGTTGAAACTGCAGACCTGTCCCCCGGGCCACGTACTAGGGCGGGGCGTGTCTGACAGGCAGTTGGAGGACTCGGTGGTAGAAGCAGGAGGAATTCGCCTAGACAACCAGTGGCCTCCAAACACTTCGACTGAACCTCTGTTTGCCTTGTTAAAATCAGGTGACCAACTTGACCAGGTTCGAGGTTTGTTGTTCAGCTTATTTAAATCATCGTATCGACTGAGAAAAGATGTTTTTAGAAAACTCGTGGAAGAAAAAACAGGTCTGGAGATGTCCGACACAGACAGTAAAAACTTTCTGAAGGAGTACTGTGCAGTGAAGGCAGGGGGGTGGTGGTATCTGAGGGGGACAGTCCCAGAGTCCTGACAGAGGGCAGGTCGTAGGAAGAGCAGTCTGTGATCAGTCAACTAGAACAGTCACACTTCAATGAAACTGTCTTTAGTTTACTACATCCTTCTTTTTCTAAAAGATATTAAAACTTTTTTTTTATTTCTGTGGACTGAGAAAAGTAGAGATAAATGAACTAACTTATTAAGTACGAGTGTCATATGTTTACTGACTACATTTAATCAAGTTTTATACACTTGTTGTAAATATCAAACTTTACTAATGATGAAGTATAACAGATCAACTTCTCGTTTTCTACACAGAGAAGTAAACCATTTACTGTTTTAGCTGTGGATTAAAGTAAGATGACAGAAATAATGTGAAACAAACAGTTTTAAAGGGACTGAGTGAACTTCAGTGTTTTGTAAAATTCATGTTTTGATAAACAGAACACCAAAATAGTCTTCATGTCTTGTCTTTTACTACTCTTACAGTTGTCTCCCCTTTCAGTCTTTTTTTGTTTTAACTTGATGAGTGGTAAACTGGAGCTTTCTGAATGGTACACCAAATTTAAAAAATGTTACTCACAATGAGCTGTGTCTCACTATGAGCTATGTCTCATGCAGCCCATTTCTCAAAAAAGGTTGCCCATCCATATTTTAGATAGTAATAAGTATCAACTTTAAGTAAATGCTAAAGTTTTATCTATAGTATATGTTATGTGTATGCTTTACTTTAAAAATAACAAGGATGAAGCAAAATGACTCAGTATGTAATTTCTGCCTCTTTTTTTTTTTTCTTAACTTTTTTTATACTTCATTATTAGCTAAGAATGGTTTTAACAACAGATAAAACCACTTGATAGTACACAAGACATGTTCATACATTTTAGCTTACTTTTATATCATCATCTTGATATTTAAATTTAGTGTTAATGATTGTAAACTGAAACTTGCTCACAAATCAGTTTTAAAATTTGATTTGTGACAATTTTGAGTCCAGTGAAGTTAATCAAAATATTTTAAATGTTATTATCTGATGATGATGTTGTCATTATTATAAAATGGAAATAACATTTTACGTTTCTTGATCAACGAATTGTAATTAACAAAAGTGACGTCCACAAATAATAAATTTGAAAATGTATTAAATCCAACACAAAAATGAGTGAGCTTTATTTATTTGATGTTAAATACTGTGTTTGTATTGTACTTTGTAGTGTCTAGTGTGAATGTTGTAACAAAATCAAATTAAAAGTTAAATACAACACAGAAATGTGATATTTATTAAATACTAAAGGTTGTTTGTATTATAACAAAATCATAATAAGAGATTAATTTATTAAATGTTATATATTTTTTGTTACACTATATGTAGTGTGTTGTCACAAAACATTTATTAAACAGCATTACACATCACTAGTTGAAGTAGCTGATGTGTGTTATAATAGTCATTGTCTACAGAAATCATAATGAAAAATCTTCAGGAATAGATTTGATATCAAATTATGAAATGTTAATTTCCAGCATGCTGCAGATTTTGTGGTTTTTCTTGAGAAAGACGTGTGTGAAGTTAACTCTATTTTAAAATGAAATTAAAGAGAGTTTTTAGAAACAGGGTTTTCATTTTATAAACGTACAAGTTTGTAACTGCCGGTCTCTTCATGTGGCATAATAAACAAAATATTTGTAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04801	RPC5	RPC5 protein	Family	Interproscan
PF19725	RPC5_C	DNA-directed RNA polymerase III subunit RPC5 C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006886	Family	DNA-directed RNA polymerase III subunit Rpc5	Interproscan
IPR045576	Domain	DNA-directed RNA polymerase III subunit RPC5, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12069	DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005666	Cellular Component	RNA polymerase III complex	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0042797	Biological Process	tRNA transcription by RNA polymerase III	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf78_0.3 global RNA-seq network