Gene detail

Detailed information of CsqKR_Scaf75_6.45 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf75_6.45	GLUCOSAMINE-6-PHOSPHATE ISOMERASE	chr6	13385417	13389210	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf75_6.45

AAATTCTCTTTGTTTATCACAGTGGGTATTGTATGTAACTTGTATTCAAATATATGTTTTTAGATGCGTTTGGTGATTTTGGACACATATGATGATGTTTCCCTGTGGGCAGCAAAGTATGTTCGTCGAAGAATTCTGGATTTCAATCCTGGGCCTGACAAATTGTTCACTTTGGGTCTTCCAACAGGTAGTACCCCACTTGGTATGTATCGGAAGCTGATTGAGTTTCACAAAGAAGGAAAACTGTCTTTTAAATATGTGAAGACATTTAATATGGATGAATATGTTGCCTTGCCTAGGAATCATCCTGAGAGTTATCACACATTTATGTGGCAGAATTTCTTCAAGCACATTGACATACAGCCAGAAAATGCTCACATCCTTGATGGAAATGCCAAAGATATTGTGAAAGAATGTGAGGAATTTGAAGAAAAAATTAAAATGGCTGGTGGAATTCAGCTTTTTATTGGAGGGATAGGTCCAGATGGTCACATAGCATTCAACGAGCCTGGTTCAAGTCTGGTCTCACGGACACGCGTAAAGACACTAAACCAGGACACAATACAAGCTAATGCCAGATTCTTTGATGGTGATATTTCCAAAGTACCAACCGAGGCTCTGACAGTTGGAGTGGGAACAGTTATGGATGCTCAGGAGGTTATGATTTTGATAACTGGTTCTCACAAAGCATTTGCATTGCACAAAGCCATTGAAGAAGGCATCAACCACATGTGGACGGTGTCAGCTTTCCAACAACATCCCAAATCAATTTTCATTTGTGACGAGGATGCTACTTTAGAGCTTCGTGTGAAAACAGTCAAATATTTCAAAGGTTTGATGCATGTTCACAACAAACTGGTTGAAGATCCTGTCACAAAATAATATATTTATGTGTTGTAAAATTTCTGAGACATGTACATTTTTTATTTGAATTCTTAAAAGAAAAGAAAACTTCCTCTATCTTTGAGAATAATATATGCAGATAATGTATTTCTTAAATGGAAAAATTATATACAGATTATAGCTTGAAATTTTAAAAGTAAAAAACAACCTCATTGTATCATGAAATAAATTAAATGACATAAACATAACATATATTTTATATCTAGATATATTCATATATATATTAGAATTTGAACCTTGAAATTAAAAAAATATATTGTCATATATGTGTGTCTGTAGATGGATTACAGATAGCTATATATTGATTATAAATTAAACAAATAAATGAAACAAAATTTCAGGATTGGATCAAATACTGATATCAGGATTTCCAAGTCATACAAACTGTCTTCAAGTCTAATCAGTTAAAAAAATTTAAATTATTATATTTTGTATTATGATGATATATTGATAATCACTGCATTATTAATTCCAGTTATGTTTTTTTACATATCTGAAATCTTCTTGTACAACTACATGCATACCTTGATAATTTGTAAAAGATTTGAAAAATTGTTAAGGCCAGTATCTTTTCTTTCTTTTTTTAACCTTTTTATTGTGTCATAAACTTTTAACTTATTTCTAACTAATGTTGTTAAATTTTGTTTGTTCTTTCTGAATCATAATCTACAAGTGCATAATAAATCGCAGAAAAATGATGTAACAATTGTGACTTTAATCATTTAATTTTGTTGCTTTTGTTTTTCTTTCATTTTTTTAATGTTTTTAAGGTTAGAAATAAATTCTATGGTATTGATGGAATAATATGGGCATAATGATCATAATTTCTTTTTTAAATATAGAAACATGAGGTGTAATTAAATTTTGTTTGTTAAATACAACAAAAAATATATTTTTATCATAAAATTAAGGTACAATTTTTATTAGTTTTTCTAAAATAACAAATTTATTCAATTTACTTGTATAGAATAATTAGTAAATAAAAGCAAAATTATTTTATTTATCTTTTATACATTTTTGAGAAGTTTTTCAACTAGTACTTCATTTTTATGTTCATCGCTATTACTTAGTTATACAAGTATTTTTAAGGTGATAATTGTTTGCATAATAAATAATTTTAACACTGGGTTTTGTCATAAAGCAGTCTTTTACACTACGGTTTGTAGTAACTGCTCAGAATGTTTTTATTTCTGTACGTTATCATTTAAAGTTATATTTTCTTTATTGCAACAGATAGAACAACATTGCTGACATTATAGGATTAAGAATTTAGTGGAACAATACTTTTTTTTTTTTTTTTTGTTGTTGTTGTTTTTTTGTGCCTACTTGAGAACAAATGTCTGAAAGATTAAAAAGTTATCAGCTGGGGCTTAACATGAAGCTAGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01182	Glucosamine_iso	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004547	Family	Glucosamine-6-phosphate isomerase	Interproscan
IPR006148	Domain	Glucosamine/galactosamine-6-phosphate isomerase	Interproscan
IPR018321	Conserved_site	Glucosamine-6-phosphate isomerase, conserved site	Interproscan
IPR037171	Homologous_superfamily	NagB/RpiA transferase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11280	GLUCOSAMINE-6-PHOSPHATE ISOMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004342	Molecular Function	glucosamine-6-phosphate deaminase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006043	Biological Process	glucosamine catabolic process	Interproscan
GO:0006044	Biological Process	N-acetylglucosamine metabolic process	Interproscan
GO:0006046	Biological Process	N-acetylglucosamine catabolic process	Interproscan
GO:0019262	Biological Process	N-acetylneuraminate catabolic process	Interproscan
GO:0042802	Molecular Function	identical protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf75_6.45 global RNA-seq network