Gene detail

Detailed information of CsqKR_Scaf75_5.16 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf75_5.16	SALVADOR FAMILY WW DOMAIN-CONTAINING PROTEIN 1	chr6	13489395	13501713	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf75_5.16

GTGGCTGTTTACAGATGTAAACACATATCGGAATCTGGACAGATGTCGAATTTTATGTTCCAGAACCTGTCAGAACAATGTCTATGACAGTGACAGTGACTGAATCACAGAATCTGCCAGAAGTAAACACAGTTGACAGAAATACTGAAGATAATGAACAGGGAGAAGATTACAGAGAAGTTGAAGTGATAGAATTTGATAACTGTTCTCAAGGCTTGGGCTTGAAGATCTTTGGCGGGTCAAGTGTTGATGGTACAGAACAGTATGGGATTTTTATTAAAAAGATTCTTCCAGGAGGCCTAGCAGACACTCAGGGTCATCTGCAGGAAGGAGACCAGATCTTAGAAGTTAATAACATAAGATTTGAAGATATCACAAACGATAGGGCTGTGTCTGTTTTGAGACAGGCTTCTTCTTCGAATCATGTCCAGATGGTCATAGCAAGAGACGAAGAAACAAGAAAGGAATATGTGAGATTTCTGAAACACCACACAAGCTACAGTCCTTCATCACAGACACCAGGCAGTCCCTGGCTGTCACCTGTGTCAAATACTAGCCAAGGTTCTCCTGCAGTTTCTGTATCAAACGAAGCTGAGGCAAGTTCTATATATCTAGGATCGGAATGACCCACTTTTAGCCCCCCTCACACCCACCTGTCACATGTCACACACCCAGGATAGGTTAGGAAAGTCACCTGTTAATTCACTCACACGACATCACTCTATAGATCCACAAGAAAAACTCAAAGTTGAAAAGTTACAAGTGGCTCTTCGGTTCCTTGGTTTGGAACCAACACCTGAACAAAGACAAGAACTACACAGCAGACTGGAAGTTGATGAGGAAGGAAAAGTCAGCTACGGAGATTTTGTAAATGCAGCCAAAGAAGTCTTTCAAATGCAGAGGAAGAATCGGAACATTATCTGGCCTGGAAGTGCTGTCATCTTAGCTGCAGCTGATGTCGCACAAAATGATTCAGAAGCATTTGAACAAGAAAGTGATGAAGATTTTGAAACTGTTTTACAAGAAAGAAATGAATTAAGACTTGAAAACCAAAGACTGAGGGAATTAATTCAAGAGAAAGATCGAACAGCTCATCTTGAACTTCTCAAAGTCAGACATGAAGCCCAGTGTGCTATTCAGGAGTGCAGAGATTTGAGAAAGAAATATGAAATTGCACAGAAGGCTCAGCAGGCTGCACGCAATATAGAACAGGACTATGAAGATGTTGTGTCCCTGCTGGAAAATGAAATTACACAACTTAGAAACCAGCTTGCTAAACAAGACAGTGGTTCAGGTACAAGTAGTAATGTACAGAAAAGACTTGCTGTTCTTGTGTGTCAGCTGAAAAAGGCTGAGAGTGGAAGAAGAACATACGAAGTAGCAACAGAAAAACTTCTCACATATGTTGAGCAAGTGCACCATAGTCTTTCATCACCTTTAGATAATATACAAAACAGAAATGCTGTGGACATTGATAAGAGCAAGTCGAGTGGCCAGAAAAAGAACAAGAAACTGACCACTAAAGCTTTGTTAAAGGAAGGACAGGAGGTTGTGAAGGCTGTGAAATCTCTGATAGAAACAGTTGCACTGCCATTTGGCTGGGAAGAGGCCTACACATCAGATGGCACCAAATATTACATTAATCACACTAATCAGACGACTACGTGGACACACCCTGTGTCTGGGGTGCAGCATCATCCAGGTGATCATTCAGACAGAGCCAGACACACAGATCATCAACAGCAGAAAAAATCTCCCAGGATGTCAGATGTCAGAAATATCCTGGGGTCAGAATCTTGAAGAATTTACCAATAGTAGATTCTTGAAAAATATCCTGGGAGCAGAGTTATTGAAGAACATCCTGGAAGTAATTTTTTAAAATTTCCTATCAGAAGTATCGTGGGAGTAAAGTTTCAAATAATATGTTAGTGGTTAAGTCAAGAAAAGTTATGGGCATGGTTTGGTTATATTCTAGGTAAAAACAAAAGTAATAAGAAATATATCCTGTATTATTTTTGTATGCTGGGAAAAGGTAGTACTTATCTTTTTGGAACAAAATATGTTTATATATAACATATTGAGCTAGAAGACCTGAACAAATCCTTCTCCATTTACGATAAGTTCTGTATTCAAAATAGCGAGGAAAAAAAAGAATGATTAAGAAAATTAAAAGAAAATCATGATGGAACGTTCTGAGACAGAAACTTAAGTAAACAGAAATACAAGATATTGAGAAGAAATATTTATATAGGATATTTTCAAAGAACTTGGACACAAGTAACTGAAAAAGCAGAACCTCAGCACAGAACAGATAGATAAGTACTTTCAGAAATATGCATATGATTAGGATTGAACAGAAAATTGAATGGTTTTATGTAAAAATGAATAGAACATAAAATGATTTTATGTAGCAAGGAGTAGATTATAAAATGGTTTTATTTAGAACCCAGAATGTTTTGTTTTTTAATAATGGTATATGACAACATACAGAGGATTTGATAGAATATAAAACAGTTTCATTTCAGAATGAGTAGAATACAGAATGGTTTTTAAAGTGTTTTATATATCAGTATATACAAGAGCTGATAAAATATAAATGGTTTTATACACTGCAGAATGTACATTTTGATGAATATGTGTTAAAATAGCATATTCTAACAGGTGGGTGAAAATGATTTTTATGTATGAATATAGGTACATATTGATGGAACTAGTATTTGTCAAAACATGAGAATTGTTTTTCTAAGTCAAATGATTTTATGTACATGTACAGGTACATATAGATGGAGCTATAATATGTCAAAACATAAGAATTATTTAAAAGTGAAATGGTTTTATGTACAAGTGAGGTACATACAAATAGAGGTAGCATTTGTCAAAACATAGGGAATTGTTTGAAAGTAAAATGGTTTTATGTACAAGTGAGGTACAGACAAACAGAGGTAGCATTTGTCAAAACATAGGGAATTGTTTGAAAGTAAAATGGTTTTATGTACAAGTAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00397	WW	WW domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001202	Domain	WW domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR030030	Family	Scaffold protein salvador	Interproscan
IPR036020	Homologous_superfamily	WW domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47522	SALVADOR FAMILY WW DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006915	Biological Process	apoptotic process	Interproscan
GO:0008285	Biological Process	negative regulation of cell population proliferation	Interproscan
GO:0035329	Biological Process	hippo signaling	Interproscan
GO:0042127	Biological Process	regulation of cell population proliferation	Interproscan
GO:0043065	Biological Process	positive regulation of apoptotic process	Interproscan
GO:0060090	Molecular Function	molecular adaptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf75_5.16 global RNA-seq network