Gene detail

Detailed information of CsqKR_Scaf75_4.27 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf75_4.27	LEUCINE-RICH REPEAT-CONTAINING	chr6	13655836	13675211	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf75_4.27

ATGATAAAAAGAAAATGGCTAAAGTGTTATTCTGTTTGCGTGTTGAAGGGTCAGCTTGTCTACCTGCCATCCAGGATTTCTCATCTAGCTCTGGACATGGAGTTTGTGAAGAAAAGACTGCAAATTGGAGTTGGAACTGAACCTAATGAACAGGTTGGCAAGAGAGTTCCTTGTGTAGGGGAGACAACTCGAATCTGGACTAAGGACATTATTTCTGAGCTCCTGAAAGAAAAGGGTAAAAATATGCACACTGTGTTGGTTTATCTTGGAATTATGCGTTTGCCGTGTATCAGAACAAAACCTGAGGATCCTGTTTGTCTGTTTACCACACTGGATAAACTGCAGCCAACTGAAGCTAAACTGAGTGATTTCTGGGCTAATGGCAAAGAGCTGGAAAACACTGTAGTGATGTCACGCTGCTACAAGTTTGCAAATGGATTGCCACCGAGTCTGCTGTCTGCCACGATGACGTTGTGCTCTAACTTCTCACGACCAGTCTTGCTGTGTTCCAATGGAGGCGTGTTCCAGTCAGGGGCTGTGCAGACTGTCATCATTCAACACAATATTCAAAAAGGTGAAGCAGTGACAATTGAATCAAAATGTTTTTGTCCCGAGAATGACAATGAAACAATTGACGAAGACACGAAATTCCATATTGAGGAGTACACATGGCAGGCATACTGCATTTTCTGTGACATCATAGATTTCTACATCGCCAACCAGGGCCTTGTTACCATCATTGAGGAAAATGAACCACAGTGTTTTGTGAACACCTCAATTGGTTGTTCCCACGACTGGACTTTGTCTGATCTCGAGCATCCTCAGACTGTGTGCACCATGTGTAACTTGTGCTGTGACAGCGGAATTGACTGCAAATGGAGTGGAATTATGGGACAGTATCTCCGTGAGTGTTGCTGCGGAACAAAAGTAAACGGATGTAGGCAATGCGGGATATGCAAAAGATGTGCTGATGAATTATGGCAAATTCGATCATTTCTTCGACCCTGTATTGAAGTATCTCAGCCTTCTAAAACTGGCAAACACAGTGCAATTCCTATCAATGGTGTCACATCCAATGAAGTGGAGTGCATCAATCTGGACATATCAAGTATGCCTGTCTGTCTACAGAAACAAAATGACTCTTCTGGAGCAGTAATTCAAGTGTTTCCTGGGGCTGCAGTGGAGATTCCATCAGTGACAGAAATAGAAGAATATAACAAGAAAAGAAGGTCTGTTAAATCCAAGCTGAGGTTCGATCAGGGAGACATCATCAAAATCAAACTCACTGAGATTCCAAGAACCGAGCAGGTGGTTGCAGATGTTGATGAAGAAGATGAGGTAGTGGAGATAAAACCTGTGTATCACACAATATTTTGCCAAATCATAGAACCAGGAGAACTGAGAACCATTTCTATTGGCTTGTGTCACAAACGTTACCTTGCCAACCAGCAGCCTGGCTGGGCATCTTCATCCATTGGTTTCCATGCAGATGATGGAGGTATTTTTGTTGCCTCTGGTTGGCCACTTCACAAAGTTGGAGAAGTTTTTACTGGTGACAAGATGACGTGTCAGTTGGATGTGGACAGAAGTAAAGTTATATTTTACCACAATGACAAACAGGTATATGAGAGTAACAAGTTACGTATGACTGCAATGTATCCAATTGTTGGTCTGCACTCTGAAGGCGAAGTTGTACGTTTGCTGGACAAAGAACCATGGCTGCCTCCCCAAAAAGGAGATTTACCACCATTACCTGCTGCATTTGACTGTAAGAAATATGGAAACTTATGGATCAGTCCAGGCCACACTTTACACCTGTTGAGCAGAGCTGCACTTCATGGCTGGCTTTTACTTCACAATCCAAGTAAAGACCTCATTGGATTCATGATAACTGCAAACAGTGGAAAGACAGCATTAGAAAGCTGGAGCTACACAGGGTATCTGGAACCACACAAATCTCGGTGTATTCGTTTAAAACACAAAGAAACACCAAGCACTTTAAATATTTTGTGGTTTAACTTGGAGTTTGGAAAAAAGTATACAGAAGAAGAAATCCAGATATTTCGTTCTCATCTCAACTCAGAAAGATTACATTCCCACAGTATTCAAGAAGATTTTTACATACTGGAAATTCTCAAGAATGGTGGTTGTGTTGAGAAATACTGGCTGGGTGGTGGAGCCTATCACTGCCTGATACCTGATACCTTGTCAGAGGATCCATCAAAAGATATCTATCTGAGATATCCAAAATCACCTACGTTTGATCAACCCAACATGTTTCAGAAAGGAATGCGGATGGTTGCACAACTATATGAGAATGTCTATGCAGAGTGTATGATTGTGTCTGTATCTGAAGACAACCAGACACTGGCACTTGAATACTCACCAAAGGATTGTGACGAAAATGATGTCATGCAGGTCAGAACAGATTCAGAAGTCATCCAGTTAAAAGAGGTTCCCTTGGAAGCCTTAGAAGATGTCAAAGAGAAAATGGGACAGCTGAAATCACAGAGTAAGAAAGAAGACAAGAAGAGTGGGAAAATTGTTAAAGATGAACGTGGGGATGATGTGGAAGAACCAAAGGAAGAGAAAGCAGAAGATACAGTAGACAGTGCACCTCCAGAGGAAGGGGCAGAAGAGGATGGAGAGAAGGCAGGAGGATCTAGCTTCACAAGCTGGGGTAAAGAAAGCAGACATGACAGGAAGAGAAAGGCAAAGGAAGTTGAAGAGAAAAGAAAAATGAAAGCTGACATTGAAGTGCTTGGTTATGAAACACGAGGTAATATTTCTGCAGAAAAGAGAGCATACCTCTTTCCACCACTACACCTACTTACTGAGTCTGCTCAATTTGCCATCATTGCTCTGGATCCTAACTGGAAGGAAAATTCCCTGATTTCACAGGCCAAGTGTCAGAGCATACCGACCAGGGTCACAGTTCAGGAGTATCAGATAATGGAGTGCTCGCGTAACCTTCCCATGTGGGTTCAGGGTTCAGGAAAGGATGGAAAGATTGACCAAGCTTTTGCATTCCTGCCTCAGAGCCTCGACAGAACCAGTCTGTGTCACCCATCTGTGTCAGACATGTTTGAAAACATTGACGAGCTGCTGGACATACCCATTCACTTTGTGAACATCCCACCTATCACACCCAAACCTCCACTCAAAGCCAGCCTAATGTATGCAAATATATTCTCTGGCTGGACCTACACCACACTCATTGCCACAAAGTTGTTGCTGCCACTGTGTGATAAAGTTTTTCCAGGTGGTCGGCCTGACTTTTCTAGAGAACAGCTAGAAGTGATGATGTACCAGTTGTTGCAGATTTACACTGCACAGTGCCACATCATCGCTGAGCAGTACGGCAGTCTGCAGAATCAACACATGTACAACTCGGGCACAGCCAAGATCAACAGTGCCATCAGCTATGACGACGTGAATGTCAAGACCACGGTGGATGTTGAAGATTCGTCCTACCTGCTGAAAAGAAAATTCCGCAACCACTGCCTGTGTAAAACACACCTGTGGACGCTGGAGAAAACCAGCATGTCTGACGAGGTGAGTGTGGACCTGACCATGAGCTGCTTCACGCCCTACGAAGAGACTGTCAACTGCTTCGCTCGAGACCTCTACACAGTCAAGTCCCTGCCTCCAGACCTGTTTGAGAAATTTTCAAATCTGCAGTACTTCTCCCTTGACGTCTGTGAGGCCATGAAGAGACTTCCCGAAGGAATATCCGGATGCAGACGTCTGTCCACCATTTCCCTCTGCAACATCGCCCTCACGTCGACTGCCTCCCGACATTTTTGTGACTCCTCAGCTGGAAAACCTCACCTGTTCCAACCTCATGGTCAAGACATTGCCTGGTCAGTGGCCTGTGTCCAGCAAACTGACCAGACTGGTGTTATCAGTTTCAATCCACTGACTGATCTGCCCATTGAGTTTGGAGAACTAAAGAAGCTGAAGAGTCTTTCGCTCTGTGGAATGCCTTGGATTTCAATGGACCATAACAAAACCATCACCTTTGACATTTACACAGACTGGTTCAATGACAGACCATACATACAAAACTTTTTGTCAAAAGAGAAAATCATGCAGATGTATTCAGAATGTGATGTCAGCAAAAATGGAATGCTTGATGTAGAAGATATTGCAAGGTTAAATCTCAGACTGTTCTGGGAAATTCCAAGAATTGGATCCAAAAACCTGAATGATGAAGAATATGGTGGTATTCCGCCTGCGATATTTCTGCTTACCTCCCTTGAAGAGCTCTTTCTTGACCACCAGGCTATTGTTGCTGTTCCTGCCTACATGTGTCGTCTGCTCAACTTGAGGGTTCTCAGTCTGACAAATAACCCTTTGTTGGAAAGTTTGCCTGGTTCCTTAGGACATTTACCAAATATAAGAAGCATTGATCTGATGAGCTGCCCGTCTCTGTGCACTCCGCCTAACGAGGTGGTGAGTCGAGGGTTCGAGTCTGTCAAGGCCTATCTCAAACGTCTGGCAGGAGGATTTGCCGTGTGTCGCAGAACAAAACTCATGTTTGTTGGTCTTGGAGGAGCAGGGAAAACAAGTCTTCTGAAAGCTCTAATGAGTCCTAAAAGAGGACAGATGGGACAAAGGGAGAAGCAATCACTGATGGAATTATTATCCAGCCATGGACAATCAAAAATAGTGATGGTCTGGAGGTCACCTACAATACCTGGGACTTTGCTGGTCAAACCCTGTACTACAACACACATCAGGTTGTTCTTTCTCTCAAAGAGAGCCATCTATCTCTTACTGTGGTCAACCAGACAAGGATTTGAACATGCTGGACTTGACTTCTGGCTTAGTTCTGTGGCCTGTCACGCCCCCCACACTCCCATTTTTGTAGTTGGCACTCACTGTGATCAGGTACCTAAAGCTGATATTCCTCAACACCAGCTTAAAGAACGCTACCCACAGATTGTTGGTTTTCATTTTATCAGTTCTGTGCAAGGAAAGGTATGTACAAATTTTATTCTGTTTCTAGAATGTTGCAACTGA

Transcript

CsqKR_Scaf75_4.27

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00622	SPRY	SPRY domain	Family	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR003877	Domain	SPRY domain	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR020859	Domain	Roc domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR043136	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR050715	Family	Leucine-rich repeat and signaling effector domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45752	LEUCINE-RICH REPEAT-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf75_4.27 global RNA-seq network