Gene detail

Detailed information of CsqKR_Scaf75_29.1 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf75_29.1	G-PROTEIN COUPLED RECEPTOR 124-LIKE PROTEIN	chr6	11140799	11153015	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf75_29.1

ATGATGGCCACAATAAAACATTTTGGAAGATTGCTGTTACTGTATCTTGTGTGGATACATTTGTCAGATGCATCAAACAGGTGTACAACGACTCATTATTCTGATCACTCAGATGCTAACTGCAGCTCCTTGGATTTTGAGTACATACCCTGGGCTTTGCATCACGACATTCAGTTGCTGGATATGAGTAACAACATGCTTGCAGTACTGGTAGAAAACAGTTTTATGAAGTACAAATCATTAAGAAAGCTTATCTTAGCAAACAACAAAATCAGTTCAATTGAAAAAGGAGCTTTTAACAAACTATCCAGTCTTCAGTATTTGGACTTGTCTGGAAACAGGCTGAAATCTGTTCCAACAGAAGGTCTGCAGAACATGGTCAGTCTTATCCAGCTGTATCTCAATGGGAACAGTATTACACACATTGAAAATAATGCATTTTCAGGTGTGCCATCTCTGAAACTGTTACATTTGGAGGGGAACTATCTGCGCTACATTCAGCCTAAAGGATTCATTGGATTAAACCAGCTTCAGAACTTGCAGTTACAAAACAATGCTATACAGTCACTAGAAGATGGAATCTTTCAGTATTTTGACTATCACTTGATGACTATCAGGTTATACAACAATCCCTGGTTCTGTGACTGCAGAATACGTTGGCTCAAGATCTGGCTAACCAATATGACTGCTCTGTATAAAATAAGATGGCAATTTCCAGGGTTAGAACCACAATGTGATGGGCCATCGTTGGTGCATGAAAAGAAATTTGCTGCAGTTCCTGATGATCATTTTGCTTGTCCAGTTGAAATGTATACTAGTGGTTCTCAATTGAATGTAAAACTGAAACAGGATGTTCGTATGTATTGCAAATATTTTTCTGTTCCTGAAAGTAAAGCAGCATGGTACAAAAACAACAAGAAACTGAATTTTTTCAAAAATGAGCACAAATACGTGCTTACTGAAGTGGGTTCATTCACGAAGGACAGTGTTTTAGAAGTGAAGGATTTTCAGTACGAGGATATTGGTTTTTACAAGTGTGTGGTGAAAAATATTCTCGGATCTGGTTCAATTTCTTACACTGTGACGCTGGAAGGAATTGATCCCAGTTCAATAACTCCAGTAGCAGCAATTTCAGATGAAGCAACAGAGGCAGCTGTGGATGTGAAAAGTATCATTATAGCTGTGTCTGTTATTGGCGGGTTGCTGCTCATCATGTTGATTGTTGGTGTGATTGTGTGTGGGACTGGTCGTTGGCGACGTCGCAGGCAGCAACAGAAGCAGCAGATTGCTCTTCAAGTCAAAGAACACTTTATTACAAATGGAGACGTATCCATGTCCAAGTCAACCGAAAACAGTGACAACACAGACTCTCATTCTAATGACTCAGGTCAGTACAGGGAGCAGGTGGTCACGCCATACCCAGATGAACCTGGAATGGTGACTACATCAGTGTCAAACATTTACCACAATCCAACATCTCCAAACGGTAACACATATATATCATTTGGCAGTGAGCTCTCTGATCCAGAAGATTTAAGTCAGATGTACTCAACATTTCGCAGTCAAAAGTTACCAGGATCTCAAACAGAATCTACTACACCATTACTTGACAACCACATATCTTCTATTTTTGAATCGGGTGACCCTTACAATGATTCTCAGAGGATATACACCCCACAAAGACAAAATGATTATTATGTATCAAATGGTCACATCCCTAGAACTCCTGTAAGTGCACATTCTACACAGATATACAGGGATCCTTTTAGAGATTATCAAGACTATTATGATTACAGAGACCCCTACGAAGGAAATTATCAGGATTACCAGGATTATCAAGACTATCAAGATTACAATGAATATCGTGATCCAAGAACAGAACGCTTTAATAGGGACTATCAAGACTGTCGTGAATTACAGTACCCCAAATCTAGAACAATGCCGAATTCACGAGTGCTAAATACCAAAAAAAGTGTTTCTGTTGGAAATTTACAATACAGTCTGCCTGGTCCTAGGAAGCCACCTAGAGCTACAAAATCAAGAGAATACGTGTTGGGTAGTGAGTGTGACACAAGTAGTGAAATTGAAAACATGTTAGAAACATCAGAAAGGCCAAGTTATGTGGTTGACAGACCAGGCTTTCTGGGCATCACACCAGGTACTCCAGTTTAA

Transcript

CsqKR_Scaf75_29.1

CAACATTAATAAAATAAAAAAAAAAAAAAAAAAAAAGCCCCATGATTTAGATTTAATTAACATGGCTGTTCTTGTTTTCGTATGAATCTGGGGTACAGTACTTTCATAAATAACATTCATGATTAAAAAAAAAAAAAAAAAAAAAAAAAATGATTGTTTCCAGCTACTACTACTGCTAATGAATCTATAATGAACAAAAGCTATGGAACGTCAAAAACTGTGAAAGCAGCCACTGTGTTTCACTCACATCTTTCATTCCATTAGTATTGATTTTTATGCAACTGGGCCCACGTCATGTGACTGGCCTCAGCCAAACAGGCAGTGATCAATAGTTGTTTTATAATGCAAATCTGAGCAGGTCCCCAAGAAAACACCACAGTCTGCCGCAGCATACCCTCAGTGTCTGTAACAGTCGTGTCAACATGGGATCACCAGTTCATCCTTCAGCTGCCATTTTTTTCAGCTTGTAAGGGAGGAGATTAGTCAGTGGTGGTCCACAGAAAAATGACGGGTGTGTTGTTCTTTGGCTACAGATTTACCAGCAAATTGTTACTGAAGACTAGAAGATATGAAGCTAACCATGAACAAAGGTTCACCATTTCGTTTGTTAATTATCCTGTACATTAACCAGCTCAACTGATTCTAATTACAATGATGGCCACAATAAAACATTTTGGAAGATTGCTGTTACTGTATCTTGTGTGGATACATTTGTCAGATGCATCAAACAGGTGTACAACGACTCATTATTCTGATCACTCAGATGCTAACTGCAGCTCCTTGGATTTTGAGTACATACCCTGGGCTTTGCATCACGACATTCAGTTGCTGGATATGAGTAACAACATGCTTGCAGTACTGGTAGAAAACAGTTTTATGAAGTACAAATCATTAAGAAAGCTTATCTTAGCAAACAACAAAATCAGTTCAATTGAAAAAGGAGCTTTTAACAAACTATCCAGTCTTCAGTATTTGGACTTGTCTGGAAACAGGCTGAAATCTGTTCCAACAGAAGGTCTGCAGAACATGGTCAGTCTTATCCAGCTGTATCTCAATGGGAACAGTATTACACACATTGAAAATAATGCATTTTCAGGTGTGCCATCTCTGAAACTGTTACATTTGGAGGGGAACTATCTGCGCTACATTCAGCCTAAAGGATTCATTGGATTAAACCAGCTTCAGAACTTGCAGTTACAAAACAATGCTATACAGTCACTAGAAGATGGAATCTTTCAGTATTTTGACTATCACTTGATGACTATCAGGTTATACAACAATCCCTGGTTCTGTGACTGCAGAATACGTTGGCTCAAGATCTGGCTAACCAATATGACTGCTCTGTATAAAATAAGATGGCAATTTCCAGGGTTAGAACCACAATGTGATGGGCCATCGTTGGTGCATGAAAAGAAATTTGCTGCAGTTCCTGATGATCATTTTGCTTGTCCAGTTGAAATGTATACTAGTGGTTCTCAATTGAATGTAAAACTGAAACAGGATGTTCGTATGTATTGCAAATATTTTTCTGTTCCTGAAAGTAAAGCAGCATGGTACAAAAACAACAAGAAACTGAATTTTTTCAAAAATGAGCACAAATACGTGCTTACTGAAGTGGGTTCATTCACGAAGGACAGTGTTTTAGAAGTGAAGGATTTTCAGTACGAGGATATTGGTTTTTACAAGTGTGTGGTGAAAAATATTCTCGGATCTGGTTCAATTTCTTACACTGTGACGCTGGAAGGAATTGATCCCAGTTCAATAACTCCAGTAGCAGCAATTTCAGATGAAGCAACAGAGGCAGCTGTGGATGTGAAAAGTATCATTATAGCTGTGTCTGTTATTGGCGGGTTGCTGCTCATCATGTTGATTGTTGGTGTGATTGTGTGTGGGACTGGTCGTTGGCGACGTCGCAGGCAGCAACAGAAGCAGCAGATTGCTCTTCAAGTCAAAGAACACTTTATTACAAATGGAGACGTATCCATGTCCAAGTCAACCGAAAACAGTGACAACACAGACTCTCATTCTAATGACTCAGGTCAGTACAGGGAGCAGGTGGTCACGCCATACCCAGATGAACCTGGAATGGTGACTACATCAGTGTCAAACATTTACCACAATCCAACATCTCCAAACGGTAACACATATATATCATTTGGCAGTGAGCTCTCTGATCCAGAAGATTTAAGTCAGATGTACTCAACATTTCGCAGTCAAAAGTTACCAGGATCTCAAACAGAATCTACTACACCATTACTTGACAACCACATATCTTCTATTTTTGAATCGGGTGACCCTTACAATGATTCTCAGAGGATATACACCCCACAAAGACAAAATGATTATTATGTATCAAATGGTCACATCCCTAGAACTCCTGTAAGTGCACATTCTACACAGATATACAGGGATCCTTTTAGAGATTATCAAGACTATTATGATTACAGAGACCCCTACGAAGGAAATTATCAGGATTACCAGGATTATCAAGACTATCAAGATTACAATGAATATCGTGATCCAAGAACAGAACGCTTTAATAGGGACTATCAAGACTGTCGTGAATTACAGTACCCCAAATCTAGAACAATGCCGAATTCACGAGTGCTAAATACCAAAAAAAGTGTTTCTGTTGGAAATTTACAATACAGTCTGCCTGGTCCTAGGAAGCCACCTAGAGCTACAAAATCAAGAGAATACGTGTTGGGTAGTGAGTGTGACACAAGTAGTGAAATTGAAAACATGTTAGAAACATCAGAAAGGCCAAGTTATGTGGTTGACAGACCAGGCTTTCTGGGCATCACACCAGGTACTCCAGTTTAAAAAAAAAAAAAATACGATGTGAACATTTTTAACATGGACTGATTACGAGAATAATTTATTACAAAATAATTTATTAATGACTATACCCAAACAAAGATAAATAGATCTTTGTTACTGTTGAATATGTTTATCTGTTGCATACATATTAATATGTTATTAAAATTATAAAATGTTATTACAAACTTAGCTGATTCAGATAAAATTTGCCAAAAATCATGTTGTTTTTTTAAATCAAATTTTATTAGCATGATTAGCACATTTACTTTTTATTAATGAACAAATAACCAATTTTGAGGTCCAGGCATTAGAAGAATTTTTATTTTTTTAGAAATATGTTTGTTAATAAAAGATTCATTAAGATACATTTGTCACAGAAAAGTATAGAACTTTTTTCTTACATGTGCCATTTACTATCTGTAGATCAGATGTTTTAATATTTTATAAACTATTTTTTAACTTTATTTTAACATTATACATCAGATATGTTGATAAACAGATTTCTAAGTTCCAGCTTCAGAAATACTGCAAGTTTATAATTCAAACACATTTGACATATACTTACCTTCCAGGGCAAGTCTGCCTAACAAGTGGTGGACACATGGCATGCATTCTTAGATATAAAGATTGTTTTTATTACCTTAAAAACAATACAGTAAAACAGGACTCTGGCCTTTTTTTTTTTTTTGCAAGTTGTATGTTCTAGAATTCTGGGAACCTGCCAAATGTTGAACACATAAACAAGAACAATGATTTTAGATACATTTAAAAACCATTATCAACCAGTTTTGAAGAATATATATTTTTCCATATGCTTATTGGTAATAATTAAAAACACACACATACAATACAGCTATACACATATTTACAATATCTCTCTTGTAATAAATTAAAACCATACACATACACACAGAATATATATATAAAAACATTTTTACAATATCTGATTCTTCTAGTTACATTTTTGAATACTCAAATTAAAGCTCAGATTTCCAACATAATCAGTAAGACAATGTACTGGTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000483	Domain	Cysteine-rich flanking region, C-terminal	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR051963	Family	Adhesion G protein-coupled receptor A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45930	G-PROTEIN COUPLED RECEPTOR 124-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007166	Biological Process	cell surface receptor signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf75_29.1 global RNA-seq network