Gene detail

Detailed information of CsqKR_Scaf75_27.8 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf75_27.8	PHOSPHATIDYLINOSITOL GLYCAN-RELATED	chr6	11345346	11353200	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf75_27.8

ATGGAAATTAAAATACGTAGACCTGTTATAATATTTTATTTTTCAGTAATGGTTCTAATTTTTTATTCCATGTTTCTTAAAGGCTATTTTCCAATAAAACGAGGTCTACACGGATTTACGCAAACTTCAGAAGTACCTGCAGTTCCTGAAAAAACATCCACAAATAAGTTATCAGTACCAGCTCGTCAGTATGACAGGTTAGTACTGATGGTAATTGATGCCTTAAGAGGTGATTTTGTGTTTGACATGCAGAATGGATCTACGCCTATGCCATTTTTAAGTTCTTTGATAGGAAGAGAAAGAGCCCTGCCTTTTCTGGCTAAAGTACATCCACCTACCGTGACATTACCCAGAATAAAGGCTATTACAACTGGAGATATTCCTGGATTTATTGATGTGGTGCTCAACTTTGGCTCCAGTCATCTTCAGGATGATAATCTGATCACACAATTCAAACTGGCTAACAGGACACAAATATTTTTTGGCGATGATACTTGGATAAATCTTTTCCCAGATCATTTTCTGAGATATGATGGAACTTCATCCTTTTTTGTCACTGATTATACAGAGGTTGACAATAATGTGACTCGTCATCTTTCTTCAGAATTGGTCAGTCCTGATTGGGATGTCATGATTCTTCATTACCTTGGTCTTGACCACATTGGTCATCTGAGTGGACCTAAAAGCCCTCTAATAGCACCAAAACTTGTTGAGATGGATGCTATTATTAAAACAATCTTTTCTTCAATGGAGGAATGGAGCAGTAAAGAATCAGATAAAAATCTTTTGTTGATATGTGGTGACCATGGAATGAGTAATCAAGGAGGGCATGGAGGAGCCTCTCTGGAGGAAACCATGGTTCCAGTCATCTTAGCTAGCCCTTCATTTACCCCAGAAGCTACTTCAACCAAAATAAATAGCCCCAAAAATATATTTCAAATTGATCTAGCACCAACACTAGCAATGCTCATGGGTGTGCCAATTCCAAAGAACAGTTTAGGTCAGATTGTACTTAAGAGTCTGATTGGTTACACTGTTGAAGACCAACTTAGAGCTTATCAAATCAATGCCTTTCAGATTCTCAATATACTTCAGCAAAATATCCAGAACTATGAGAGAGATGAAGGTTACCAGATATATCTGCAGACTGAAAAACAACATGGCAGATGGCTAGACAGTATGAGAACTGAACTCAGTAAAGAATCATGGGAAATATTTGGACAGAAATTGTGTGCAGATTATCAACGTAGTGTTCAACTGATGGCATCTCGCATCAGTAGAACTGCCACGACATATGACCTGTACAGTATGATTACTGCAATAGTCTTCTTGATATCGATCTTCCTGTTATTATGCATCATGATCTCTTCACCCATGACTTTCCTTTGCCAATTTTCATTCACTGATGTGGCTGCATTCAGCATCTGCTGCAGTCTTGGGGTTATTGGTCATGTGACTGTCTGCACAAGCCTCAATAAAAGCGACTTGCTGTGTCAGTCAAACGCATTGTCACTTGGTTTACAACTTTTGATGATGTGTATGTTTTGCAGCATTTTAATCCTATTTATCAGTTATAAAAAATACTACAGACCAATATTAAGGTTTATAATGCCTGGTAATATAGAGATGTTTTTCTTGATTGGTACCCTATTGCACACCCTGAGCCTTCTTTCAAGCAGTTTTGTGGAGGAGGAACACCAAACATGGTATTTTTACACCACTACAGTTCATGTGATGATCCTGATCAAAGTGCTTTATAAGAAAGGGACAGAAAGTAACAAGAATATCAGTCAGGATAAAGACAGTTTCTGCAAGAAACAGCCATGTAATACTGAATCAGAAAATAATCCAGTAGGCAAATACATGCATCATGAATCATCAGAAGACTTGTGTAATTATAACCAACAGGAACATTCTGCTTCTACAGATTCCACGATTGTTTATGAAGATTTGAAAGAAAGTGAAAATGCAGAAGGAAAATGCTTTAGTAAAAAGAATTACAAGACAGGCAGTGTGTCAGGAAGAGCCATTTTGTCAGGTTGTTTACTTTTGGTATTGCTTCGTGTCTTGCGTGCTTGGAATCAGACAGGAGACAAATGGCGTCATCTTCCAGATGTTGGAGACTGGCTTGTACGGCCAGAAAACAAAGATATTTTGTCAGGAGTAGTTGTCTTCTCAATTATTTGCATTATTGCTACAAGATGTTTCCACAGATCTCCTTTCCATACAGCTCTGTTTGTGTGGGCTATGATTTGCATCTACTGCTTCAGAGCTGCAAATGGTTCAGTCATCTTCCCAAGCATATACTCAGGAACATCCAAAGGAACTTTGGAAGCTCAAGTATGTTATGCCATGATGATGTTTTTGATGATGGAAACTCTTGTGACATGGATCTACTTTTCAATAAGACAACAACAAGACAAACCAAATTCTGGTATGATACTGTGGGAAAGAATTCAGACAATATGGCTTACTCTAGGAGTGCTTTTATCACGACCACACAACATTGCAGTGGTTTCCATGATATCAGTGTTTGAAAATCTTGTCTTTAAACATTTTATTATTCACATAAAGCAGCCGGTATTCTTGCTTCTCTACTGTGCATGGATGGGAGAGGCTACATTCTTCTTTCAGGGTAATTCTAACAGTATAACAACAGTTGATGTGACTGCAGGTTATGTTGGTTTAGTGGATTATCAACCTGTACTGATAGGCCTACTCATGTTTTCATCCACATATTTTGGACCAGTGTTTTGGTTTTTGTCATTCTTCAAGTACACTAACCACCTTTTAACTGGACAGAAGATAACATCTTACAAAACAAGACTGAAGTCATGCTACGCAAACTCTTCTCTCACATTACTGCTGGTCCACACTCTGATTCTGCTCGTTTTTACAATCTTGGTGACCATAGAACGATACCATCTTTTTGCATGGACAGTTTTCTCACCCAAACTACTCTATGAAGGAACCAAAACTATTGTAATTGTCATATTTTCTTGGATATTTGTATTTGCATCGTATGTTATATGA

Transcript

CsqKR_Scaf75_27.8

CCTCATTCATGCCTCATTCTGATGTTTACTTGGACTTAATTTTAATATTTATATTTGACAGTAGTAATGGAAATTAAAATACGTAGACCTGTTATAATATTTTATTTTTCAGTAATGGTTCTAATTTTTTATTCCATGTTTCTTAAAGGCTATTTTCCAATAAAACGAGGTCTACACGGATTTACGCAAACTTCAGAAGTACCTGCAGTTCCTGAAAAAACATCCACAAATAAGTTATCAGTACCAGCTCGTCAGTATGACAGGTTAGTACTGATGGTAATTGATGCCTTAAGAGGTGATTTTGTGTTTGACATGCAGAATGGATCTACGCCTATGCCATTTTTAAGTTCTTTGATAGGAAGAGAAAGAGCCCTGCCTTTTCTGGCTAAAGTACATCCACCTACCGTGACATTACCCAGAATAAAGGCTATTACAACTGGAGATATTCCTGGATTTATTGATGTGGTGCTCAACTTTGGCTCCAGTCATCTTCAGGATGATAATCTGATCACACAATTCAAACTGGCTAACAGGACACAAATATTTTTTGGCGATGATACTTGGATAAATCTTTTCCCAGATCATTTTCTGAGATATGATGGAACTTCATCCTTTTTTGTCACTGATTATACAGAGGTTGACAATAATGTGACTCGTCATCTTTCTTCAGAATTGGTCAGTCCTGATTGGGATGTCATGATTCTTCATTACCTTGGTCTTGACCACATTGGTCATCTGAGTGGACCTAAAAGCCCTCTAATAGCACCAAAACTTGTTGAGATGGATGCTATTATTAAAACAATCTTTTCTTCAATGGAGGAATGGAGCAGTAAAGAATCAGATAAAAATCTTTTGTTGATATGTGGTGACCATGGAATGAGTAATCAAGGAGGGCATGGAGGAGCCTCTCTGGAGGAAACCATGGTTCCAGTCATCTTAGCTAGCCCTTCATTTACCCCAGAAGCTACTTCAACCAAAATAAATAGCCCCAAAAATATATTTCAAATTGATCTAGCACCAACACTAGCAATGCTCATGGGTGTGCCAATTCCAAAGAACAGTTTAGGTCAGATTGTACTTAAGAGTCTGATTGGTTACACTGTTGAAGACCAACTTAGAGCTTATCAAATCAATGCCTTTCAGATTCTCAATATACTTCAGCAAAATATCCAGAACTATGAGAGAGATGAAGGTTACCAGATATATCTGCAGACTGAAAAACAACATGGCAGATGGCTAGACAGTATGAGAACTGAACTCAGTAAAGAATCATGGGAAATATTTGGACAGAAATTGTGTGCAGATTATCAACGTAGTGTTCAACTGATGGCATCTCGCATCAGTAGAACTGCCACGACATATGACCTGTACAGTATGATTACTGCAATAGTCTTCTTGATATCGATCTTCCTGTTATTATGCATCATGATCTCTTCACCCATGACTTTCCTTTGCCAATTTTCATTCACTGATGTGGCTGCATTCAGCATCTGCTGCAGTCTTGGGGTTATTGGTCATGTGACTGTCTGCACAAGCCTCAATAAAAGCGACTTGCTGTGTCAGTCAAACGCATTGTCACTTGGTTTACAACTTTTGATGATGTGTATGTTTTGCAGCATTTTAATCCTATTTATCAGTTATAAAAAATACTACAGACCAATATTAAGGTTTATAATGCCTGGTAATATAGAGATGTTTTTCTTGATTGGTACCCTATTGCACACCCTGAGCCTTCTTTCAAGCAGTTTTGTGGAGGAGGAACACCAAACATGGTATTTTTACACCACTACAGTTCATGTGATGATCCTGATCAAAGTGCTTTATAAGAAAGGGACAGAAAGTAACAAGAATATCAGTCAGGATAAAGACAGTTTCTGCAAGAAACAGCCATGTAATACTGAATCAGAAAATAATCCAGTAGGCAAATACATGCATCATGAATCATCAGAAGACTTGTGTAATTATAACCAACAGGAACATTCTGCTTCTACAGATTCCACGATTGTTTATGAAGATTTGAAAGAAAGTGAAAATGCAGAAGGAAAATGCTTTAGTAAAAAGAATTACAAGACAGGCAGTGTGTCAGGAAGAGCCATTTTGTCAGGTTGTTTACTTTTGGTATTGCTTCGTGTCTTGCGTGCTTGGAATCAGACAGGAGACAAATGGCGTCATCTTCCAGATGTTGGAGACTGGCTTGTACGGCCAGAAAACAAAGATATTTTGTCAGGAGTAGTTGTCTTCTCAATTATTTGCATTATTGCTACAAGATGTTTCCACAGATCTCCTTTCCATACAGCTCTGTTTGTGTGGGCTATGATTTGCATCTACTGCTTCAGAGCTGCAAATGGTTCAGTCATCTTCCCAAGCATATACTCAGGAACATCCAAAGGAACTTTGGAAGCTCAAGTATGTTATGCCATGATGATGTTTTTGATGATGGAAACTCTTGTGACATGGATCTACTTTTCAATAAGACAACAACAAGACAAACCAAATTCTGGTATGATACTGTGGGAAAGAATTCAGACAATATGGCTTACTCTAGGAGTGCTTTTATCACGACCACACAACATTGCAGTGGTTTCCATGATATCAGTGTTTGAAAATCTTGTCTTTAAACATTTTATTATTCACATAAAGCAGCCGGTATTCTTGCTTCTCTACTGTGCATGGATGGGAGAGGCTACATTCTTCTTTCAGGGTAATTCTAACAGTATAACAACAGTTGATGTGACTGCAGGTTATGTTGGTTTAGTGGATTATCAACCTGTACTGATAGGCCTACTCATGTTTTCATCCACATATTTTGGACCAGTGTTTTGGTTTTTGTCATTCTTCAAGTACACTAACCACCTTTTAACTGGACAGAAGATAACATCTTACAAAACAAGACTGAAGTCATGCTACGCAAACTCTTCTCTCACATTACTGCTGGTCCACACTCTGATTCTGCTCGTTTTTACAATCTTGGTGACCATAGAACGATACCATCTTTTTGCATGGACAGTTTTCTCACCCAAACTACTCTATGAAGGAACCAAAACTATTGTAATTGTCATATTTTCTTGGATATTTGTATTTGCATCGTATGTTATATGAGGCAGAGGCTTAAACCCAAAATGTTATAATTTGGTTTCTGTAAATGAGAAATTCATGCTCATGTGTTGATTTGAATTTTTTTAAATTATTTATTGCAGCTATTTATGTTTTGAATAAATATTTTGTATACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01663	Phosphodiest	Type I phosphodiesterase / nucleotide pyrophosphatase	Family	Interproscan
PF19316	PIGO_PIGG	GPI ethanolamine phosphate transferase membrane region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002591	Family	Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase	Interproscan
IPR017850	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR037674	Domain	GPI ethanolamine phosphate transferase 2, N-terminal	Interproscan
IPR039527	Family	GPI ethanolamine phosphate transferase 2	Interproscan
IPR045687	Domain	GPI ethanolamine phosphate transferase 2, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23072	PHOSPHATIDYLINOSITOL GLYCAN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006506	Biological Process	GPI anchor biosynthetic process	Interproscan
GO:0030176	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0051267	Molecular Function	CP2 mannose-ethanolamine phosphotransferase activity	Interproscan
GO:0051377	Molecular Function	mannose-ethanolamine phosphotransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf75_27.8 global RNA-seq network