Gene detail

Detailed information of CsqKR_Scaf75_0.13 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf75_0.13	ORAL-FACIAL-DIGITAL SYNDROME 1 PROTEIN HOMOLOG	chr6	14024163	14042135	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf75_0.13

ATGGAGGAAGCTAATCCAGAATATTTGACAGCCGAAGAGCTTCGAAGTCGTTTGTATCGAAGTTTAAAACATCGAGGCCTTATAGACACCGTTAAGTCTCAGCTGAGAAACAGCATTGTCACAGAACTGCAGACATCATTCAAAGGTCCACTATCACTGCACGACTTGAAGGACCCAGAAGAAGGATCACTTCTTCACCGAGCTGCCAACAGTCTCCTAGCAACACATCTTAAACACTGTCACTATGACTACTCGCTAAGTGTCTTCCTACCAGAAAGTGGTTTAAGTCAAGATAAGATATTTAGCACAGAAGACTTACTTCAGCTTTTGTCCATTAGTCCACAATCAAAACTTCATCAGAAATTGTTACATGCTGAGAAAAATGGTCCAGGCAAAGGTTTTCTTTGGACATTACTACATGATATATCTAGTCTTCACAGCAGATCAACCTTTGAAACAGGAGTGCAAACTGATCTTATTAAAATGGGACCAGTTAATTCATTGGATGAAAAGTTGCACAGTCTGGAAGAATTCTACTCATCAAAACGTGAAGATCACATCAAAACAGGCTCTGTGGCTGTTGAAGATCGCCTCCTGTTGTACCAGAGACAATTAGAAGACAGATACAACTCAGAACTCAAGAGAGAGCTTGCCCGGATGAAAGATAATGAAATTGCAAAAATAAGGCTGGAAGAAAAAGAACAATTTCAGAGAGAACTGAACAGAACAAGAAAAGAGCTGGAGAGAGAGTACAAATCTAGATATGATTCACTGGTGGAGAGAGAGAGGCATTCACTGGAAAGAATCAAGGCAGAACAAGAGATGCATGAAAAAGAAAATTTCACGCAAAGGCAGATAATTCTGGAAGAAATAGAATGCGTTCGACAGAGAGAAAATGAATTGAAGAGGGAAATGGAATTAAACACAAGAGAGAAGAAACTGATGGAAGAGAGGATGAAGGCGAAGGAAGAAGAGATGCGGAGAAGAGAACAGGAAGTGAAACGTAAAGAAATCGAGTTTGAGCAGAGACTGCAGAACAGCATGTCTCAATTTAAGCTGGATACACAGGCCAGGTTTATTGAAAGAACACAAAATTTGGAAGTGAGAGAAGCCAGAATTAAAGAAATGGAGAGAATTGTTTCTGAGGAGAAAGATAAAATTCAGACCTTCAAAGATGAGTTGAGAGATAAAACTCACAGAATTAATGAACTAGAAACTCTAACACAGCAACTGAGACATTCTGAAGTCACAGCAACAAGACAGAATGAGTTTATTAATGCCAAACTTAGAGATATGTCAGACTACAGTGTGCTGAAGGAACAAAATGCTTTAATGAGAAATGAGTTGGAGACTCTTCGAACGAGATTATCTGAACTTTTGACAATGAATGAGCGAGAAAGAGGAAGACAGGAGGAGTTAATGAGAGAGCTACGACGACCAACTCCTGAGACTCTGATGTTACAGAGAGATCTGGAGAGAGCGAGAGAGAGTCTGAGACAGGAGCAGATTGTCTTCCAGCAACAGAAACAGCTGCTAGAGGCACGGCTCAAAGAAGAGATTGACAGAAATCGAGAAATGGTGCAGCATTATGAAGAGCAGACACTGCAAATGAAAGAAATGAATCGTGAAGTTGTTGACTTACGTCAGCATTTGGCTATGACAAACCAAGCTCTGAACAATGAAGTGTACAGAAAAGCCCCTGGTGGAGATGATGCAAGATCAGTCGACCTCTCACATGTTTTAAGAACATCATGTGATCATGAAGCAAGTTTCCATAGCAACCGAGCTCGCTCGCCACATCTGCGCTTTGAGGACAAGGATGTTTACAATGATGTAGAATTAGATGTGGAGTCTGTTCTGCCAAAACGATTCAGTTTGTTTTCCGAGGAAGAAGATATATCATCAAATGCTTCTTGTGATGTGATAGCTGAAGCAAAATACAGATTAAAGACCTTAGAAAAAGAAGCAAACAATTTGGATCAAGCCTACCAGGATTTCCATCATCAGATTACAAATGTAGCAGCCATTCCTGATCCACTTGTAATTTCACAAAGTAAAAGACAAGACATTTGA

Transcript

CsqKR_Scaf75_0.13

TGACTGTAACATGGCGTCGTTTGAAATGTTTGTTGACTATTTGGACTTATGTTATATAAATGCAGGTGTTCATTATATTATCAGAAGAAATTAATGATATTTTTGAAGATTGATGTTCAGATAATACATACTAAAATATTGAAAAAAAAATATTAAAAAGAAACTGAAATGGAGGAAGCTAATCCAGAATATTTGACAGCCGAAGAGCTTCGAAGTCGTTTGTATCGAAGTTTAAAACATCGAGGCCTTATAGACACCGTTAAGTCTCAGCTGAGAAACAGCATTGTCACAGAACTGCAGACATCATTCAAAGGTCCACTATCACTGCACGACTTGAAGGACCCAGAAGAAGGATCACTTCTTCACCGAGCTGCCAACAGTCTCCTAGCAACACATCTTAAACACTGTCACTATGACTACTCGCTAAGTGTCTTCCTACCAGAAAGTGGTTTAAGTCAAGATAAGATATTTAGCACAGAAGACTTACTTCAGCTTTTGTCCATTAGTCCACAATCAAAACTTCATCAGAAATTGTTACATGCTGAGAAAAATGGTCCAGGCAAAGGTTTTCTTTGGACATTACTACATGATATATCTAGTCTTCACAGCAGATCAACCTTTGAAACAGGAGTGCAAACTGATCTTATTAAAATGGGACCAGTTAATTCATTGGATGAAAAGTTGCACAGTCTGGAAGAATTCTACTCATCAAAACGTGAAGATCACATCAAAACAGGCTCTGTGGCTGTTGAAGATCGCCTCCTGTTGTACCAGAGACAATTAGAAGACAGATACAACTCAGAACTCAAGAGAGAGCTTGCCCGGATGAAAGATAATGAAATTGCAAAAATAAGGCTGGAAGAAAAAGAACAATTTCAGAGAGAACTGAACAGAACAAGAAAAGAGCTGGAGAGAGAGTACAAATCTAGATATGATTCACTGGTGGAGAGAGAGAGGCATTCACTGGAAAGAATCAAGGCAGAACAAGAGATGCATGAAAAAGAAAATTTCACGCAAAGGCAGATAATTCTGGAAGAAATAGAATGCGTTCGACAGAGAGAAAATGAATTGAAGAGGGAAATGGAATTAAACACAAGAGAGAAGAAACTGATGGAAGAGAGGATGAAGGCGAAGGAAGAAGAGATGCGGAGAAGAGAACAGGAAGTGAAACGTAAAGAAATCGAGTTTGAGCAGAGACTGCAGAACAGCATGTCTCAATTTAAGCTGGATACACAGGCCAGGTTTATTGAAAGAACACAAAATTTGGAAGTGAGAGAAGCCAGAATTAAAGAAATGGAGAGAATTGTTTCTGAGGAGAAAGATAAAATTCAGACCTTCAAAGATGAGTTGAGAGATAAAACTCACAGAATTAATGAACTAGAAACTCTAACACAGCAACTGAGACATTCTGAAGTCACAGCAACAAGACAGAATGAGTTTATTAATGCCAAACTTAGAGATATGTCAGACTACAGTGTGCTGAAGGAACAAAATGCTTTAATGAGAAATGAGTTGGAGACTCTTCGAACGAGATTATCTGAACTTTTGACAATGAATGAGCGAGAAAGAGGAAGACAGGAGGAGTTAATGAGAGAGCTACGACGACCAACTCCTGAGACTCTGATGTTACAGAGAGATCTGGAGAGAGCGAGAGAGAGTCTGAGACAGGAGCAGATTGTCTTCCAGCAACAGAAACAGCTGCTAGAGGCACGGCTCAAAGAAGAGATTGACAGAAATCGAGAAATGGTGCAGCATTATGAAGAGCAGACACTGCAAATGAAAGAAATGAATCGTGAAGTTGTTGACTTACGTCAGCATTTGGCTATGACAAACCAAGCTCTGAACAATGAAGTGTACAGAAAAGCCCCTGGTGGAGATGATGCAAGATCAGTCGACCTCTCACATGTTTTAAGAACATCATGTGATCATGAAGCAAGTTTCCATAGCAACCGAGCTCGCTCGCCACATCTGCGCTTTGAGGACAAGGATGTTTACAATGATGTAGAATTAGATGTGGAGTCTGTTCTGCCAAAACGATTCAGTTTGTTTTCCGAGGAAGAAGATATATCATCAAATGCTTCTTGTGATGTGATAGCTGAAGCAAAATACAGATTAAAGACCTTAGAAAAAGAAGCAAACAATTTGGATCAAGCCTACCAGGATTTCCATCATCAGATTACAAATGTAGCAGCCATTCCTGATCCACTTGTAATTTCACAAAGTAAAAGACAAGACATTTGATTATTTCCCATGAACGCCCAATGTCCTCAAATAGAAACAAGATATGTATGTATGTATATGAAGATGATAGTTTTGAGGAGCTGAATGGAGTCAAGGACAGAATGAAAACAGAATCACAACAACCAATTCCAAAATTTGACATTTCTAACATGTCTGTAAATGAAGTTCAGACAAGCCATGTTGTTGCCAGAAAAGAAAAGTCTCGTCCTATCACTGTGTCAGATTTAGAAGAACGTCCAGGTTCACCAAGTATTGTTGTTGTTGGTGGTTCTGAGTCAAGTGCAGGACACACTCCAGACAATGAAAACAAAACTACGAACGCAACGGAAACCCAGAGACCAACAGGAATGGCACAACCTTCTCTTGATGCAGTGTGGAAGAGCAATCAAAATGTGCCTGCAACAACCTTACCAACTGTTTCACTTGATTCTGCCTGGAAAAGCAGTCAAAACACCCCATCAACCTTGCCTCATCTGTCACTTGACAGTGCTTGGGAAAGTGAGGAAAAGAAGAAAGCAGAGAGGGCAAAGCAAGAGGAACAACAACAGAGAATCTGGGAAGAAGAGAGACAGAGGAGGGAGGCAGAGAGACGCAGACTTGAGGAGGAGGCTTGGGAGAGAGAACAGCAGAAGCTAAAAGAATTAGAGGCACCAAAAACAGGCACAGCAGAAAAAGTGGAAGAAGATAAAACTGAGAAAAAAGAAGAGAAACAAGAAATGGAGGAAATAGACCCTTTAATGCAGAAGTACATGAGTTTAGTTCAACAGCAGAAAGAAAAGGAAAAACAGCCAGTTGAAAAAAAGGCTGTCAGTAATTGGTCTAAAGGAAATGCTGAAACCAGCTCAAACCAGTCTGACAGTGAAATATCAGCACCTGAAAAAAAGAGCTCACCAGCATCTGATGATGAATTTGGCTGGTAGCGAAAATGAATATTTGTTTGAATGCATGGACCACAAACATATCTTTGAATGTATATAAATCCATATTCTACCTTGAAAATATGATAGAAATCTGACTATCCTCATGAAAATAGGTGACAAAAGCTTTAGAATGTTTACATAAGTTTACATTAATGAACTAGAAAAATCTAAAAAATAGTAAATTGTCTAAATTAGTTATTGAGTCATGGTTATTTGAATATAGTAAAATGAAGGATTGTTAAAACTTTTAAAATATATATATAATTGATTGTAACATTATTATATTGAAACAGATACTTCAAAATATCAGGACAGCACAAGAAAATAATAACAATTATTTCTTTGTGGTCCTATTTAACATCTTAAAGCTCGACTGTGATAAAATCATTATTATGTATTCACAAACAACCCAGTGATTGGTGTCTTACTGCTTAGCTCAGTTAATGTATATCATATAACAAACAATTTGATTGGTTATCATTCACATGGCGATTCGGATAAAAGAAGCTGATAGGTCATCAGTAATAGATCTCTGAGAAAGAAATAGTTTCATTGGTTGTCTGTCACAGGTGATATGCAGCAAAACGTAACAGAGGTAATTCAGTTTATTTTCATTGAACTTTGTTGATTAGATTTTATGAACTTGTAATGACTAACAGGTTTTTGTCATTCAAAATAACAAATATTAACGAAATATCTGATTAATTTATTTATAACTGAAAAACAATGCACTAAAGTTCATATATCAGCAAGTAATGATTTATATAATATGTAAAAAGTTATTGTTATTTATTCAAATACGTAATGATTTATGTGATTGGAGTTGTCATATTTTGATTTGTGTTGTGAACATGAACTAGATATGCCTGAATATTATCAATAGAAGTCGTTTCGTATTTTATTGTTGAAAATTCATCGAACCCTCAGATGTGATATTTTTAAATTTCCGTCTCGTAAATGTTATATATTATTATATATATGCATTTACTAAGTACTGTAATGAACATGTAATTTTTGCAAACAAATGTCATATTTAACATTTGATTAAAAAATTGAATTATAATTTATATGAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16045	LisH_2	LisH	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006594	Conserved_site	LIS1 homology motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR39063	ORAL-FACIAL-DIGITAL SYNDROME 1 PROTEIN HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005813	Cellular Component	centrosome	Interproscan
GO:0036064	Cellular Component	ciliary basal body	Interproscan
GO:0060287	Biological Process	epithelial cilium movement involved in determination of left/right asymmetry	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf75_0.13 global RNA-seq network