Detailed information of CsqKR_Scaf73_22.2 in Chrysomallon squamiferum Gene info
Gene IDAnnotationChromosomeStartEndStrand
CsqKR_Scaf73_22.2E3 UBIQUITIN-PROTEIN LIGASE TRIP12chr126617622688379-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity|HECT

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00632HECTHECT-domain (ubiquitin-transferase)DomainInterproscan
PF06701MIB_HERC2Mib_herc2DomainInterproscan
PF07738Sad1_UNCSad1 / UNC-like C-terminal FamilyInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000569DomainHECT domainInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR008979Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR010606DomainMib-herc2Interproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR012919DomainSUN domainInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR035983Homologous_superfamilyHECT, E3 ligase catalytic domainInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR037252Homologous_superfamilyMib/herc2 domain superfamilyInterproscan
IPR045322FamilyE3 ubiquitin-protein ligase HECTD1/TRIP12-likeInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR45670E3 UBIQUITIN-PROTEIN LIGASE TRIP12Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0016607Cellular Componentnuclear speckInterproscan
GO:0043161Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0048856Biological Processanatomical structure developmentInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0070534Biological Processprotein K63-linked ubiquitinationInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for CsqKR_Scaf73_22.2 global RNA-seq network
TOP