Gene detail

Detailed information of CsqKR_Scaf72_8.10 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf72_8.10	PRE-MRNA SPLICING FACTOR	chr8	28600480	28613698	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf72_8.10

ATGCCTGTTGTAAAAGAAAGTTTCAGTAATGACATTTTTTTCGAAGAAGATGATTTGGCATATGAAGAGGATATTTTAAGGAATCCATTTTCTGTGAAATGCTGGCTGAGATACTTGGAACACAAAAAGGGTGCCTCTCGTGATGTGGTTAACTTAATTTTCGAACGTGCTCTCAAAGAGTTACCCGGAAGTTATAAGCTATGGTATCAGTACTTACGACTTCGACGCCGTCAAGTCCGAGGAAGATGTGTGACTGATCCTGCTTATGAAGATATGCCAAGGATATGGTTAGATTATTGCCAGCTGCTGATAGATCAGGGAAAGATAACTCGTACAAGGAGAACCTTTGATCGAGCATTAAGAGCATTGCCAGTTACTCAGCATAACAGGATTTGGCCTCTTTACCTCAAATTTGTTAGAATATATGAAATTCCAGAAACAGCTGTCAGAGTGTATCGGCGTCATGTGAAGTTGCAGAAGGAAAATACTGAAGAATACATTGAATATCTCAAGTCAATAGATTGGCTGGATGAGGCAGCTGTCAAACTTATTGATATTATCAATGATGACACTTTTGTGTCCAAAGAAGGAAAATCAAAGCATCAGCTGTGGAATGAGCTGTGTGATTTGATTGCTAAGAACCCAGACAAAGTGAAAACTCCCAAGATTGAACCTATTATCAGACAAGGTTTGAAAAGATACTCAGATCAGATTGGTGTTCTTTGGAACTCCATGGCTAACTATTATATTAGAGGAGGCCATTTTGAAAGGGCACGGGACATCTACGAGGAAGGAATAGACACAGTGATTACAGTAAGAGATTTCACACAAGTCTTTGATGCATACGCTCAGTTTGAAAAAAGCATGATTGCTGCTAAGATGGAAACAATGGAAGAAACAGGTGTTTCCGAAGAAGATGACCTTGAACTTGAACTACGATTAGCAATATTAGAGTCATTGATGGATAGAAGACCTTTACTTTTAAATAGTGTCTTACTAAGACAGAATCCACACAATATTCATGAATGGCACAAACGGGTGAAGCTATATGAAGGGAATCCTACAGAAATCATCAATACATATACAACAGCTGTTCAGACTGTTGATCCAAAACAAGCTTCAGGTAAACCTCACACTCTGTGGGTGGAGTTTGCCAAGTTTTATGAAAATGCAGATCAACTTGAAGATGCCAGACTGATATTTGATAAAGCAGTCAAAGTGGAATACAAAACAGTTGATGATCTGGCTTTAATTTATTGTGAATGGTGTGAGATGGAAATACGACATCAAAATTTTGATGAAGCTTTGAAACTGCTGCAGAAGGCAACCACACCACCACCAAGAAAAATTGCCTATCATGACGAAACTGAAAAGGTTCAAGCACGAGTACATAAATCACTCAAAGTTTGGTCTCTGTATGCTGACCTTGAAGAAAGCTTTGGCACATTCAAGTCATGCAAAGCAGTCTATGACAGGATAATTGAGTTGAGGATAGCTACACCTCAGATTATAATGAACTATGGAATGTTCCTTGAAGAAAACAACTATTTTGAAGAAGCTTTCAAAGCATATGAGAAAGGAATTGCTTTATTCAAATGGCCTAATGTCTATGACATATGGAATACCTACTTAACCAAATTCATTGACAGATATGGAGGCAAGAAACTGGAGAGAGCCCGAGATCTGTTTGAACAGTGTTTAGAAAACTGTCCTCCCAAATTTGCAAAAGCTATCTACTTACTGTATGCTAAGCTGGAAGAGGACTATGGGCTAGCAAGACATGCAATGGCTGTTTATGATAAAGCAACAAAAGGAGTTTTACCAGAAGAACAGTATGAGATGTTCAATATCTACATCAAACGAGCAGCTGAAATATATGGTGTCACTCATACAAGAACTATCTATGAACAAGCCATTGAGGTTTTACCACATGAACAAGCAAGAGAGATGTGTTTAAGATTTGCTGATCTGGAGAAAAAACTTGGAGAGATTGACAGAGCAAGAGCTATTTATGCTCATTGTTCTCAAATATGTGATCCAAGGGTTGCTCCAGTGTTCTGGGATACATGGAAGGAATTTGAAATCAAGCATGGAAATGAAGACACCGTTAGGGAGATGTTAAGAATAAAACGCAGTGTACAGGCAATCTACAACACACAGGTGAATTTTATGTCTGCTCAAATGTTGGCAGTTTCCAGTGTGAAAGGAGAAAAAGAAGAAGGAAACAGTGAAGATGATCAGATGAAGAAACTTGAAGAGAAAGCAAGAAAATTAGCAGAAGAAGCAGTCCTTGATGAACCAAAAGAAGACAAAGGAATACTGTTTGTTAGGAGTAACACAACAAGTGAAGAATTGGGAGACATTACTAAAGTTGCTAATCCAGAAGAGATTTCTATAGACGATGATTTCTCAAGTGACGAAGACGAAACTGTTGAAGAGGTGAATGTTCAGGCTGTACCCAAGAAAGTGTTTGGAGGACTGGTGAATGAGGATGATGATGATGACTGA

Transcript

CsqKR_Scaf72_8.10

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR003107	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR045075	Family	Pre-mRNA-splicing factor Syf1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11246	PRE-MRNA SPLICING FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000349	Biological Process	generation of catalytic spliceosome for first transesterification step	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0000974	Cellular Component	Prp19 complex	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0071007	Cellular Component	U2-type catalytic step 2 spliceosome	Interproscan
GO:0071014	Cellular Component	post-mRNA release spliceosomal complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf72_8.10 global RNA-seq network