Gene detail

Detailed information of CsqKR_Scaf69_86.50 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf69_86.50	F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHA	chr7	28607188	28614673	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf69_86.50

ATGAATTACTTACTCACTGATTTATAATTTTAAATTATATAAAAGAAATTGCAAAAAGATGTAATATTTTTTTTTTTTTTTAAAGAAATTTATATATTTGATCTCGCAGCAGCGTTGTTTGTCAGTATCCAAAATGTCGGCTTTGGACGAAGAATCGATTTCTGACGCCGAACGGGTGAGAATAGCATCCAACTTTATTCTTCATGCACCACCGGGAGAATTCAATGAAGTATTTAATGATGTCAGAATTTTAGTCAATGATGATAATTTGCTGAAAGAAGGTGCTTCTGGTGCTTTTGCCCAGTATAACAGAGACCAGTTTACACCATGCAAAATAGAGGGATCAGAATACCAAGCACTGATCACAGAATATGGTGACCTTGGTGGTGGTCGATACTTGGATCCTCGTACCAAACAGAGCTTCAGATATGACCATTTACGTAAAGAGGCCAGTGACTTTCAGAAAGCAGACATTGACCAGAAAGCAGAGCCATGGCGGGCAGCCATTGAGTCGGCTGTTACAGCTTACACTGCGACCTACTACGAACATGGAATCTGCACTGTGTATGGCAGCAGTTCAGGCAGTGACATTACCATAACTGTCTGTCTAGAAAGTCACCATTTCCAAGCTAGGCAATACTGGAACGGCAGGTGGAGGTCTCAGTGGTCAACCACATTTTCTTCATCCGGGGGATCAGCTGAACTGAAGGGCGTTCTAAGAGTGCAGGTTCACTATTATGAAGATGGAAATGTGCAGTTAGTTAGTTCAAAAGAAACTAGTTCCAAATTGAATGTATCCAATGAACAACAAACAGCCAAGAATTTTGTTAATATTTTGTCTGAAACTGAGAATGAATACCAGACGGCATTGTCTGAAAACTACCAGACCATGTCTGACACCACATTTAAAGCCTTGCGAAGACAGTTACCAGTTACGAGGACAAAGATTGACTGGCACAAAATTATTATATCTGGCTACAAGATAGGAGGAGAGCTGAAGCAGTCATGATTCATCTGTCTTTTATCTTTTCCAAATAATTCTTTTTTTATTGATGCAATCTAACCTCGGACGCGTGACATGACCAATGATACAAATATGGCTTCCTGTGTACTTATTTGTAAATTGGACATCTTTATGCATCAAGACACATTGATACATGTATTTGTCATTCAGTCTGGAAAACTCCTGTTTTTGAAGTGTACGGCAATGATGATGATGATGATATGTAATTACTCATTTAGATTGAATTTTATTTTTCACGATTATATATTTTTGTTTTGTTTTTCGTTGAACATATACTGATTACAACAGATTGCAGAAATAATAAATATCTATCTGCTATGGATTTCCATTTGGTCATGAAGATCCTATTTTTATGACAGATTATCAGATAATAAAATTTTGTTTTCCTTTGACAAATGAAAACCTAACGATTTAAATTTTGTTTAACTGTTGGTTTTTTTGGATAGTGATTTGTCATTATTTATGCTGCTGATACATGTGAACTATAAATTTGGGTAAAATTATGCTAACTGTTTATTTGTGGCTATCTCTCTTATGCAAATAGATAGGCTTTGCTAATTCTATATTTACTTTTTAATTATCAAATAAAATAAAATTCTAATCTTTTTTATGGTTTTTTAGGTTGCTTCAAAAAAGGTTCCTTTTGTTTCCCACTTTCTGGCATGTTATTTTTATTTTATTGCTATTTTCATTTTAATATTTTATATGTTTATCAAGGATTAAATTTAAAGGCAAATCAATAAAAATAATTTAAAAATGAGTTAGATGTGTATTTTTTTTGGCAAAATAACTTCATGGTATGAGTAAAAGAGCATAGATATTCAAATATTGGTTAAAGTACTTAAATGGAGTAATATGGCAACTTCTAAACTAAAATAATTTTGAAAAATAAGTCTTAATTTTATATGAATTCTGATCATTAAGCACAATTTGGATTTAATTCTGCAATAAAGTTTCTAATGGTATCATTATTATTATTATTGTCTAGAATAAATAATATCTTAAACACTAAAAATGTTCATGTAATAGGAATTTAAATATTTTAAATTGTTCATTAATATTTAGTTATCTAAGTTTTAAATTTTTTTTATTTTTTTTTTTTTTAAAGTTAAGTTCAACTGAGGATAAAGAAAATCATTTAAGCTTTTATTTTAATAATTCAGTGTTATTAACTGTTCACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01267	F-actin_cap_A	F-actin capping protein alpha subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002189	Family	F-actin-capping protein subunit alpha	Interproscan
IPR017865	Conserved_site	F-actin capping protein, alpha subunit, conserved site	Interproscan
IPR037282	Homologous_superfamily	F-actin-capping protein subunit alpha/beta	Interproscan
IPR042276	Homologous_superfamily	F-actin-capping protein subunit alpha/beta, domain 2	Interproscan
IPR042489	Homologous_superfamily	F-actin capping protein, alpha subunit, domain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10653	F-ACTIN-CAPPING PROTEIN SUBUNIT ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008290	Cellular Component	F-actin capping protein complex	Interproscan
GO:0030036	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030479	Cellular Component	actin cortical patch	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:0051016	Biological Process	barbed-end actin filament capping	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf69_86.50 global RNA-seq network