Gene detail

Detailed information of CsqKR_Scaf69_70.16 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf69_70.16	ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN	chr7	26907503	26920048	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf69_70.16

ATGATGAGTAGCGACCCCGTTTTTATTGCGCAGGTGGTAAAACATGAAGAAGATACAGTCGCCGTCATTGTAAATAAAATAAAGGAGAAGCTTACTGGATCTGGGGTTGTTGGTCGTATTCTCAGACTGCAGGGCGAACCAGGTGAGGCAATTGTCAAGGCGGCCGAAAATGAGAACGTGAACCTCATCGTTACGGGGACGCGGGGCATGGGCAAAGTGCGTCGGACGTTGGTTGGAAGCGTCAGCGACTACATCTTACACCACTCGCACGTTCCAGTGTTAGTGTGTCGACAGAAAGAGGAAAAAAACGATGGTCTAGTTAATGTTCAGGAACTTGGTCAGCCGTATGACGGAACTAGTTTTAGATTTCCCAAAACTTTAGAGTATCAGATTGGCGAAGACGTCACAGGACACAGGCTTATACTGACTAGAAATGATCACGTGACAGACGACAGCAAAGTTTATGTTCTAACGCGAAACGAAGATGGCAGTTCAAACGTGGAAAAGCAAGACAGTGCAGGAATTCAGGATTATGCTCTGTATCAAGACTTGCAAAATGGTGGTGTTTTCACGGTGAGATATCGATGTGAAAGACTGAAATGCCGACGAACTATTATGGGCAGTTTCTACAAAGGTCCATTCAAATTTCATCTGGAGGCAGCAACCAGAGATCTTAGTGCAGAAAATGATGATCTCTATCATCTGATTAAAATCAAAGAATCCAGAAGTGAACATCAAAATTTAAATGATTTTGCAATGAATTTTGGAAGTGAACAGTTTCTCAGAAGGAAAAGATCTTTGATGAAAGTTAATTACTACATTGAACTGCTGATGGTGTTGGATTATTCAGTTTACCAAAACTGGTTCAATAAACAAAATGGAACATTAGAAGAAAAAGATAAATTAGCAGTGAAAAAGATGAGGGAATATTTTTCTCATTATGTTAATGGAATTGATTTGAGATTCAGAAGTATAGATGATGCTGAAATGGCATTTTTTATTAAACTGGCTGGTTACATAATTTGTAAGACTAATGAATCTTCACCATGGACCATGAATAACAGGGGACCTGTGATTGCTGGAAAATATGGCCGCCAGGACCGACATTCTGTTAGTCTTAGCATCCTGAAGGATTTCAGAGCCTGGCACAGAAATGCCACAGAAGAGAAGAAACTACCGGAACATGATCACGCCATGCTGTGGACAATAGATGACCTGGCAGATGGAGATTTTACTGGTGTTGCAGGTTATGCTTATGTCAGTGGTGTTTGCACCTCATCAATGGTTTCTGTGGTGGAAGAACATGGAGCATTTTCAAGCATAGGAATAGCAGCACATGAACTGGGCCACAATTTGGGAGCTGGCCATGATGTAGGAGATGTTTGTCCTTCCAAACACCAGTTCATCATGTCACCATCAAGTGGTGCTGTTCCAACAGATGCAGAGAATCCGTGGAAGTTTTCTAATTGTTCTGTTGAAGACTTCAGAATCCTGATGAATAACCTCAACAACAAAGATAAGAACTGTCTACTTGATAAGTCTACACACACTGATCCAGATTTTGAGACCCACATTTCTCTGCTTCCTGGTCAGCTGTATGGTGTGGATGAGCAGTGTGCCTTGCTTTACCAGGAAGGATCAAAACAGTGCAAATTTAGTTCAATACCTGAGGAAGAAATTTGTCAGAAGTTGTGGTGCACATCAACAAAGAGTAATTTCTGTTACAGTGGATCTGCAGCAGCTATGGGTACATCATGTGGCAAAGAAAAGTGGTGCATAAGAGGTGCCTGCATTAATATATCAGAAACAAATCAGACTGAAATACCAACTGTTGAACCAGTGACAACATTCAAGCCTGAAACCACCCAGTTATTTACACCAACACCTACAACCACATCACCCATTACAACATCAATATCGGCGTCTGTCAGCGTAGTGAAACCTGAATTCACCACAGTACCTACCACCAACACTGTGGTCCACACCTCTACCTTGTCACAGGTCATGACTACAACAGTGTTGCCTACAACAGCATTGCAGTCATCTTCTCAAACTATTTCAGTAATTAATCCAACATCTACTGCAGTGTTTCAGTCTAGTTTAACTTTTGAATCCACTTCTGCTTTTACGTCCAATGCTACATTATTTGAATCCAGTTCTTCGATGTCAGAAACTGTTTCAACAACCAGTCCTACCTCTACTTCAGTTTCTGAAATTAGTTCATCAATTAATCCTACTTCTACTGTGATATCCAAACCATCTTCAACTATGCAACCCACATCTACTTCAGTATTTGAACCCTCTTCAACTGTGATGGTCAAAACTACTTCAGCAGTTGAATCCAATTCTACAACAGCATTTAAAACCACTTCAATATTTAGTGCAGAATCCACATCAGTGATCAGTCCTGGAAGCACAACGTTCAGTGGTCAAACTTCCCCAACTCACAAACCCGTAACAGCAACACCGTTTGAGACTAATTTGTTTACATCATTTGAACCTTTCTCAACACCATCCTCTACAGCATTCAAACATCCAGCAACTACATCTTTCAATATTGAGACATCAACATTTGAATTTGCGACATCTTCATATCCCACTACAGCTGCAACAAATACATTCTACCCTAAAACAACGGTTTTCTTCCCAGAGGTCTCTCGCACCAGTTTCAAATCATTGTCTGTCATCACTACACCATATGAACAGGAATACAGTACACATTTTGAACACGTTACCACCACGTGGTTCCCAACATCCTCAACATGGTCTGAACAGGCTTCAAAAGTCCCAGAAGTTGCGACAACCAGCACCAAACAGGCCACTACCTCAAGCCCAGTGAAACCAACTCAAGTGTGCACAGACAGTACGTTCTGTTCTACTCATGACAAGAAATTTTTGTCACTGATTTGCCGTCACAGTTTAGGAGCAGCAATGTGTTGTCAAGCTTGTAAAAAACTCAATGGTTCAGAAATACAGTGTACAGACAAATCTTGGTATTGTCGCTATCTGAGGAAATCTCACTGCTACAAGAAAAGTTACGTAACAAACTGCTGTGAAACGTGCAAAAAACACGGAGTGGAAGACACAGGTGAAAAATCTTGTACTGACTCACAGCAGTGTCGATATACAAGTCGGTACAGGTGTTACTCCAGCTACATACAGAAAAAGTGCTGTGAGATGTGTGAAAAGAACAAAGTGGACATCCCAGGTTGTGAATATGGTGATAAGAAGTCGTACTGCAGGAGAATCACAACACACTCAAAGTACAGATGTTACAAAGAAGAAAATCAGTGCTGTGAAACGTGTGTTAATTATGTCGATGATTATGCCCATCCTAAATGCAAATATGGCAATAGCTGGCGTTCAAATAAATGTGAGAGAATGTTCAGTAAACACAACAAAGACACACACAAGTTCTGTTCCATTAGCTACTACCGGACGAAATGTTGTAAAATCTGTGGATATTACCTAAAATAA

Transcript

CsqKR_Scaf69_70.16

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00582	Usp	Universal stress protein family	Domain	Interproscan
PF13688	Reprolysin_5	Metallo-peptidase family M12	Family	Interproscan
PF17771	ADAMTS_CR_2	ADAMTS cysteine-rich domain 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001590	Domain	Peptidase M12B, ADAM/reprolysin	Interproscan
IPR006015	Family	Universal stress protein A family	Interproscan
IPR006016	Domain	UspA	Interproscan
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR041645	Domain	ADAMTS, cysteine-rich domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11905	ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf69_70.16 global RNA-seq network