Gene detail

Detailed information of CsqKR_Scaf69_26.20 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf69_26.20	PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47	chr7	22537274	22541930	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf69_26.20

AAAGAAACAACATGGCGGACATGTGGGAAGAACTGCTGGTTGCAAAAAAAGAAAATCGTCGAGAGTTGACTCTTCATGGAGCAGATATTAATAAGAGAATCGAAAAGAATGGCCTTGATAGAAACATTTATAAATTAATAAATCTGAATTTTTTAGCTATTACTAATTCATGTCTGACACAGGTATCAGCTTCAATTAGTGATCTGAGCAACTTGGGAAACCTTGTGTTGCGCAACAATCAACTTGATTCCCTGCCTCCAGAAATAGGTAAACTGACAAAACTGAAAATGTTAGATGTTTCTGGCAATATGATAGAAATTTTTCCTGCTGAAATAACACAGCTGACAGAACTTCAGTCTTTAAATGCCAGCATGAACAAGTTGTCATGTTTTCCAGATGTTTCAAATATGACGGCACTGCATATTCTTAATTTGTCTCATAATCAACTCAAGTGCTTTCCAGATGGCATAACAAGTGAAAATTTATGCCATCTAGCAGATGTCAATTTATGTCATAATTTGATTGAAGAAATACCTGGTGATATTTCTAATTTGGTACATTTGACAACACTTAATTTATCTGATAACAAAATTAAAGATGTACCACTTGAGATCAGCAAGTGTCCAAAACTGAAAGAGTTAGTTCTCACTGGAAACAAACTAAGTGACCGTAGACTAGGTAAAATGACTGAACAGTGCCAAACTAAAGCAGTGTTAGACTACCTGGCAAATGCTTTACAAAAGCAGAGTGGAGAGACAAAAGGTAAAAAGAATAAAGGAAGGAAAAAGAAGTCAGGCAAAAAGGACGATGTTGAAGAACTAGCCAAGAATTTTTTTAATATTGTCCATTTTGATGATGAAGATGGTTTGACCATTCAAGTAAAACAAGAAGTGCTGCCTGTTAGACCTTACTTTGTCAGCTGTATTGTGAGAAATCTCAATTTTAACAAGTCTGTAAATATGTTCAAAAGATTCATCAATCTGCAGACCAAGCTGCATGACACTGTGTGCAACAAAAGACAAGCTGCAACTATAGCCACACATGATTTTAAGCTGATAAAATCTCCACTAATTTACACAGCACTCTCACCAAGAAACATCAAGATTATTCCTTTGTTCAAAACTAAGGAATCTACTGCAGTGGAACTGGTGGCAGGTTTGAGGAAAGAGGCAGATGACATCAGAAAGGAGAAAAAGAGAAATAACATTGGTGGAGTGCACAAATACTTGGATCTGCTCAAAGACAAGACTGTTTACCCTTGTTTGATTGATGGAGAAGGACAAGTCATTTCTTTTCCTCCCATCACCAACAGTGATAAAACTAAAATTACTAAAGAGACAACAGAGATTCTGATTGAGGTAACAAGTTCTACCAATCTGGATGTCTGTAAGGCTGCCATGGATGAGATTCTGAAGGAAATGTTAGAGATGGGAATTGGATCTGGCTCAGATGCTGCTGGAGGTGGTGATGTGAATGGAGCTGTGGGTGGAACTGAAGATGGTGGTGAGATCTGTTCAGGAAAACCTGAAGCCCTGACAGTTGAGCAGGTGCGAGTGATTGATGAAGAAGGTGGTTTGAGGGTTTTGTATCCCTCTAGAATGGATCTGAAAGATGATGTCTATGAAGTCAAAAGAGAGTGATGTGCTTGGATTTGGACTGGCACCATTATGAAATGACATGATATACCGAAATATAAAAAATATAAACTTTTGGATCAGAAAATTTGTAAGTGATATCATAAATGTCATATTGAGTAATAAAGCAGATCCAGGGGCAAAAAGTGCAATTGAACTTTTTTTTCCCCACTCCATTTAAAAAAATACAATAAAAAATACGCAAAATTTTCACGTTAGTATGGTTAATTTTTTTTTCAATTTGAAATAAGAAATTTATTATAGTTAGTATTTCAAAAGTGCTTACATACACCCCAAAGAAAATAATTGCCATCATGAAATTAAAATTATTAAAATTGTCTGACAAATAATGAAACATAAATGTCATTACTATTCAGAAAAACTAGACATGTGAGTAAACAATCAGCATGTGATTTGTCAGAAGAAAAGAAACTGCAGAATTAAATATGTTAATTTACTATTATTTGTTTTTTTTTCCTCCTTGTAGTGTGTAGAGTTAAAAATGTTGACCAGTCAAATTATAAAAATTGAAATTGCAGGAAAGTGAAACTGACTTTTGCACACTTATATAATTTTTCCAGTAAAACTATTTTAATCTACTAGTTTCTTAAAGGAATTCATACTGGATGAGTTTTGTCTTCATATAGTATTAGATATTTTTATACTTCGTGTTAACTTATGATTTCCTGTCCAGCGTTTAATTTCATCATTTTGCAGAGGTTTTCTTCTCTGCAGCTATATTCATTTATTATGTAAAGAAAACAGAATAAATAAAGTTTTGAAATCACAGTCTTCTTGAATAAAGTATCAATCTTTCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR005146	Domain	B3/B4 tRNA-binding domain	Interproscan
IPR020825	Homologous_superfamily	Phenylalanyl-tRNA synthetase-like, B3/B4	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR045060	Family	Phenylalanine-tRNA ligase, class IIc, beta subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10947	PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004826	Molecular Function	phenylalanine-tRNA ligase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006432	Biological Process	phenylalanyl-tRNA aminoacylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf69_26.20 global RNA-seq network