Gene detail

Detailed information of CsqKR_Scaf666_3.9 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf666_3.9	STEROL ISOMERASE	chr7	8957150	8961214	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf666_3.9

CTGGCGAGAACTTTGATTGGTTTTTTCAATCGGCAGATGAGGGTGGTAGGTTGTAGATAAGTCACATAACTGTTTAAATGGTTTATTCGCCTGTGTTTCGAAGTGTTAATAACACTGGTAGTTTACTTTTCGAAAGTATGAATTCAGAACCGATGCATCCATATTATCCTAGGGATCTTAAACTTCCTCACTATGTTCCGAACGAAATTCCGACTGTGGAGCTTTTTCTTTTATTTTTCGGTGTGATCGGAGTATGTTTGGTTCTGCTATGGATCTACGCTAGTTCTGTGACAAATGTCAGATTCTCTTTCACACAGCGTTTGGTCCTCTGCTGGTTCGTAATGTCCGGCATTATTCACTCCATTCTGGAAGGATATTTTGGTATTTATCATCAGACTTTGGCAGGAAGAATGTCCTTTCTTGGTCAGATATGGAAAGAATACAGCAAAGGTGACAGTCGGTATTTAAGCTCAGACACCTTTGTACTGTGTATGGAAAGAATCACAGCCTTTGTAGATGGACCCCTGTGCATATTTACAGTGATAGCGTATTTCCGCAACAGCCCATACCGGTATATTTTACAGCTAATTGTTTCCCTTTGTGAGCTGTATGGAGACACTTTGTACTTCATGACAGAAATCCAAGAAGACTTCACACATGGAGAAATGTACCATCCACAGTATTTCTGGTTTTATTTTGTATTTATGAACAGTTTATGGATTATTATACCAGTCATTTTAATTATACAAGCATCATACAAGCTCGCCTGCTGTCAGAGTTTTCAAGACAGTGTTAAGGTGAAACTGTCATAATATTTTCTTCCATAAAGTTTTATAATGTTTTTTTCTTCAGATTCTTTGTAAATGTATTTTATTATTAGAATATAACATTTTATACTATTAATACATTCAGTCAGATTTTTTAAATTACTAATTTAAGAAAATCATGTTTACTGTAGGTTAAAGCATTTTTATAATTTTCTTCACAAATTAAATTCACTGTGTAAAATCAAGGTAGTGTAACATATCCACCACTGAAATAAGTGATTATATTAACTGTTTCTAAATACATTATTTTGTCCCAATTAAGAAATATACATTTGAGTTGACTTATTCCAGTTGAATTTAGATATTATTTAGTCAGTCACTGATCTTTTTAGTATGAATTAAATTATGCAATTTAAAATTTCTAATATCAAAGTATATTTATATTAAACTATTTACATATTTTATATAATTTAGCTTAATTAAACAGAATTATTTATAATGGAGCCTGATAATTTGTTAGATATTTAAATCATAGAGTGATTGTTTTGACTAATGTTTTGTAAATATTCTAAACTGTGACAGTTCTAACAGAATTAGACTAAAGTTAAATTATGTAGCTGGTTTGTGAGTGTTTTATTATTATTATTATTATTTTTTTATTATTATTATTATTATTATTATTGTCCATTTACAAAAGCACCAAATTTTCAAAATGAAGATAATTAATATGATCATTAACAGTAGTTTCTTTCTTTCTTTATTTATTTATTATTATTTCTTTTTTGTACAGCAGTGAAATATGACCATATTTCTTGCAAAAGTTATGTAAATATAACTGAAACTGAAATTGCTTTAAATGCATTTCAAATAGTCCAAAGATGTGGATTATAAAATCATACCTCAAAGATTTGCTAGTTTTCACTTTTGAATATTATTTTGTTAATTTACATATTCAAGTCCATATTTTCTTCAATTTTTTTTTTTACATTCTTCAGGTAATAATTATTTTACTAAAACATAATAAATTTAATTTATATATAGGAGATTTATCATAATAGTGTTTGTTATAATTTTAAGAATCCCCAACCCAGAATGTATGGTATATTTTATAAAGTTGTAGAAAATAATAATGAAAAATGTGATGAAAGTAATTAAATGATATTTTATTTATGAGCAAAAATATTTTCTTTAAAATAAATGAAGAACACTATTGAGCTTTGAAAACAGGATATTTCAGTGTTCTATTATTAGTTTTTATATTTCTTTTGGATTTATTGGCTTTATCTTCTTTTTAAAAATGACTTTTGTGAAACGTTGAAAATAACAATTATTGGGGAAAAAATGTCAATTCCAGTTAAAATATAAACAATTTACATTAACATAACCAGGACCAAGTTACTTAGTTTTGTGTAAATTACAGCAAATTTTGTTGTTGTTGTTGTTGTTGTTTTCACCTAAAGGCTAGTGTAAAAAACTATATTTTACAGTATTTCTTTTTAATACACATTTATATGTATTTGCAGGACAATTAAACTTTAAAGAAGTAATGTTTTCATTGACTGACTGTACATTTTTTTTTCATGTTGTAAATAAAATAACTCATGTTTCCGGTGTCACAGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05241	EBP	EXPERA (EXPanded EBP superfamily)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007905	Family	Emopamil-binding protein	Interproscan
IPR033118	Domain	EXPERA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14207	STEROL ISOMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000247	Molecular Function	C-8 sterol isomerase activity	Interproscan
GO:0004769	Molecular Function	steroid delta-isomerase activity	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006695	Biological Process	cholesterol biosynthetic process	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016125	Biological Process	sterol metabolic process	Interproscan
GO:0016126	Biological Process	sterol biosynthetic process	Interproscan
GO:0047750	Molecular Function	cholestenol delta-isomerase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf666_3.9 global RNA-seq network