Gene detail

Detailed information of CsqKR_Scaf666_2.4 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf666_2.4	HOST CELL FACTOR	chr7	8698128	8713397	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf666_2.4

ATGGCGGCACCCATATTGAAGTGGAAGCGGGTAACAAACACAACAGGACCTTGTCCTAGGCCACGACATGGACATCGAGCAGTTGCAATTAAAGATTTAATGATCGTTTTTGGTGGTGGCAATGAAGGGATCGTTGATGAACTTCATGTTTACAATACTACCACAAATCAGTGGTTTGTTCCAGCAGTGCGTGGTGACATTCCCCCAGGATGTGCTGCTTACGGATTTGTGTGCGACGGCACTCGTATTCTTATATTTGGTGGTATGGTGGAATATGGCAAATATTCAAATGAGCTGTATGAATTGCAGGCCAGTCGATGGGAATGGAAGCGGCTGAAACCAAAAGCTCCTAAAAATGGACCACCTCCTTGTCCTCGACTGGGTCACAGTTTTACATTACTGGGTAACAAAGCCTGGCTTTTTGGAGGTCTTGCAAATGACAGTGAAGATCCCAAGAACAACATACCAAGATACTTGAATGACATCTATGCTCTGGAACTGAAGCCATTTTCCAATCAGTTGTCTTGGGAACTTCCAAACACTGTGGGTCAGCCTCCACCCCCAAGGGAATCTCATTCATGTGCAGCACATGTTGGAAAAGATGGCCGACATCCACGGCTCTTCATATATGGTGGCATGAGTGGTTGTCGTTTAGGAGATCTGTGGCAGTATGAAGTTGACACATCAACATGGACAAAGCCTATAGTCCAAGGGATGCCTCCATTGCCAAGAAGTCTCCATTCAGCAACAGTCATTGGAAATAGAATGTTTGTGTTTGGCGGCTGGGTCCCTCTGGTTATGGATGATGTCAAAGTAGCCACACATGAAAAGGAATGGAAATGTACAAACACTCTGGCTTCTCTTAATCTTGAAACCATGACATGGGAGCCACTGGCCATGGAGGTGTTTGAAGATGCTCTTCCTCGTGCTAGAGCTGGTCACTGCAGTGTTGCAATCAACACTCGACTTTTTATCTGGAGTGGCAGAGATGGCTATCGCAAAGCTTGGAACAACCAGGTGTGTTTCAAGGATTTGTGGTTCTTAGAAACGGAGAAACCACCAGCACCGTCTCGTGTTCAGCTAGTGCGTGCAAGTACAAACACACTTGAGGTGTGCTGGGGTGCTGTGCCAACAGCTGACGCCTATCTTCTGCAGCTACAGAAGTATGATCTCCCACCATCACATGCTATGACACCAACGGCTGTGCCCACCTCCAGTGCCCTTGTTAAACCAGTAACGCCAACGTTACAGCAAGCACCCATTATACGATCACCTGTAGCAGGAGCAGGGCAAATTCGAACCATTGGTTCTGGTGCCCTAACATCTATAGCTCTCACTTCCCCGCAGACTATTAGAGTGACTCCAGGTCAGCCTCAAACTGTCCGAGTTGGTACACCAGGAACAACCATACTGAAGGCTGGAACTGGAAACCTGGCAGGCAAACAGGTGATCACAGTACACAAAGCTGGAACAGTGACAAATCAGCCTCAAATTGTCACTCTGGTGAAGACCACACAGGGCATGACAGTTGCTTCAACTAAAGGAGGTATACCTCATGGAGCAACTATTGTCAAATTGGTTACAACACAGGCTGGATCAGGAAAAGCAGGAGGGACAGTTATTAGTCAGAGTCCAGGACAAACTCCATCAACAATTCTGGGAATTAGTAGTGTTCAGCCAAACCCTGTTGTTTCAAAGAATGTAACCAACATAATAAAAACAATTCCAACATCGATAATCTCCATGGCAAAAGTGGGTGGCAACAGTGTTACCACACAGGCTGGTACAAAAACCATTGTCATTACTGCACCAAAAGGCAGTGGTGGTACTCTCACAACACCAACGAAGATTATGACAGTTCCTAAACTTGGTGGTCATGGCAGCACACAGTTTATAGTTGTCAGCCCCCAGAGTGCAGCTGGGAAAGCAACAACACAGGCCATACTTGGTTCTGGAGGTAAAGCTGTAACTGTTTCAACACTGCCTTCATCACCACAGATTGTCACACCAGGAACAAAACCAGTTGTTACTTTACTTTCAAGTCAAGGTGGAAACATTTCAACAGCAGCAACTGCAAGTTCCACAATTCTGAATAACCCTGTTGTGAAAACTCCAGGTACATCAACCATTTCTCTAATAGCACAGCCATCATCAGGAATGACACCAACCTCGATTGTAACACGACAGATAATTGCAACGTCACATTCATCATTGGCTGGGACAGCGGGGAAGCCGGTTCAGATCACAATAACACCAGTGGGACAAAATGCAGCCCAAGTTCCAAAAACTGCAACAGTGACGACAATCACTACACAGCCTACAATCACAGAAGCTACTAGTGACGGACTCCAGCACGAAAGTGGTGAGGCCAGTGCAGGAGATTGTGGCAGGCCAGAAGGGTGTGGCACTCCTCCTCCAGGGGATTGTGGCAGACCAGAAGGGTGTGGCACTCCTCCACCAGGAGATTGTGGCAGACCAGAAGGATGTGGCACTCCTCCTCCAGGGGATTGTGGCAGACCAGAAGGATGTGGCACTCCTCCTCCAGGGGATTGTGGCAGGCCAGAAGGATGTGGCACTCCTCCTCCAGGGGATTGTGGCAGGCCAGAAGGATGTGGCACTCCTCCTCCAGGGGATTGTGGCAGGCCAGAAGGGTGTGGCACTCCTCCTCCAGGAGATTGTGGCAGGCCAGAAGGGTGTGGAACACCCCCTTTAGAAAATGGAGAAGACAATCCTCAACAGCAAATGGATGAAGGTCAGGAAAATACAGCAACTAGTACAGAAGGTGGAGTGCTGGAGCAGTTACAAGGCACTCAAGCCTCTGGGACTGACAGTTCTAATGCAGACCAGCCAATGGAGGGTGTGGCATCAGACGCTGGCCCAGCTTCAGAAGCCACAACCTCAGAAACTGGACAGGGTGATGCTCCTGAACCTATGGATACAAGTTTTGATCCTCATTTAAAGGTGAAGAAAGAAAGTGAAGATGGTTCGGGTGCACATCAGGAACATTCAGTAGAGAGTGCAGCTCAGCAGAAACCAGTGTTAACAAGTGATAGTTCAGATCCACTTGCAACATTAGCATCAGCTGCATCATCTTCAACACCAGCTATAACCACTGTCAAACAAGAACAGGATGTAGCTAATGGTGTAAAACCTGAAACTGATGTTAAACAGGAAAAGAATGTAGCTGTAAAACGTGATGGCAACCAGTGGTATGATGTAGGAATCATTAAAGGAACTACCTGCATTGTTTCTCATTATCATCTCCCATCTGAAGGAGCTCAGGGTAATGGTGATGACATAGATGTGGTGAATGTCCCAGATCACAGTATTTTGAAAAGACAAGAGCTTCAGCCTGGCACAGCCTACAAATTCAGAGTGGCAGGAATCAATGCATGTGGCCGGGGACCTTTCAGTGAAGTGTCCGCATTTAAAACATGTCTGCCTGGCTTCCCAGGAGCACCTTCAGCAATTAAAATAAGCAAGAGTACAGAAGGTGCACATTTGTCGTGGGAGCCTCCACAGAACACAGCTGGAAAAATAACTGAATATTCTGTGTACCTAGCAGTTCGGAATGCTGCAGCTACAGAACAGAAACCCGGAACTCCAGCTCAGTTAGCATTTGTGCGTGTTTACTGTGGTCCGAATCCATCGTGTGTTGTCACAACAGCCAGTCTGGCTTCAGCCCATATAGACTTTACAACAAAGCCTGCCATCATCTTCCGAATTGCAGCTAGAAATGAGAAAGGTTATGGACCTGCAACACAAGTCAGGTGGTTGCAAGATGCCAACCAAACAGCTACAAGTTCCAAAGTTGCAGTTAAAAGGGTTATTCCTTATGGGAAGCCAACAGTATCAGCTCAAGACAGTGCTATAAAGAAAATCAAAACTGAAGATGAAGGCTAG

Transcript

CsqKR_Scaf666_2.4

GTGGGTAATTTCAATATGGCGGCACCCATATTGAAGTGGAAGCGGGTAACAAACACAACAGGACCTTGTCCTAGGCCACGACATGGACATCGAGCAGTTGCAATTAAAGATTTAATGATCGTTTTTGGTGGTGGCAATGAAGGGATCGTTGATGAACTTCATGTTTACAATACTACCACAAATCAGTGGTTTGTTCCAGCAGTGCGTGGTGACATTCCCCCAGGATGTGCTGCTTACGGATTTGTGTGCGACGGCACTCGTATTCTTATATTTGGTGGTATGGTGGAATATGGCAAATATTCAAATGAGCTGTATGAATTGCAGGCCAGTCGATGGGAATGGAAGCGGCTGAAACCAAAAGCTCCTAAAAATGGACCACCTCCTTGTCCTCGACTGGGTCACAGTTTTACATTACTGGGTAACAAAGCCTGGCTTTTTGGAGGTCTTGCAAATGACAGTGAAGATCCCAAGAACAACATACCAAGATACTTGAATGACATCTATGCTCTGGAACTGAAGCCATTTTCCAATCAGTTGTCTTGGGAACTTCCAAACACTGTGGGTCAGCCTCCACCCCCAAGGGAATCTCATTCATGTGCAGCACATGTTGGAAAAGATGGCCGACATCCACGGCTCTTCATATATGGTGGCATGAGTGGTTGTCGTTTAGGAGATCTGTGGCAGTATGAAGTTGACACATCAACATGGACAAAGCCTATAGTCCAAGGGATGCCTCCATTGCCAAGAAGTCTCCATTCAGCAACAGTCATTGGAAATAGAATGTTTGTGTTTGGCGGCTGGGTCCCTCTGGTTATGGATGATGTCAAAGTAGCCACACATGAAAAGGAATGGAAATGTACAAACACTCTGGCTTCTCTTAATCTTGAAACCATGACATGGGAGCCACTGGCCATGGAGGTGTTTGAAGATGCTCTTCCTCGTGCTAGAGCTGGTCACTGCAGTGTTGCAATCAACACTCGACTTTTTATCTGGAGTGGCAGAGATGGCTATCGCAAAGCTTGGAACAACCAGGTGTGTTTCAAGGATTTGTGGTTCTTAGAAACGGAGAAACCACCAGCACCGTCTCGTGTTCAGCTAGTGCGTGCAAGTACAAACACACTTGAGGTGTGCTGGGGTGCTGTGCCAACAGCTGACGCCTATCTTCTGCAGCTACAGAAGTATGATCTCCCACCATCACATGCTATGACACCAACGGCTGTGCCCACCTCCAGTGCCCTTGTTAAACCAGTAACGCCAACGTTACAGCAAGCACCCATTATACGATCACCTGTAGCAGGAGCAGGGCAAATTCGAACCATTGGTTCTGGTGCCCTAACATCTATAGCTCTCACTTCCCCGCAGACTATTAGAGTGACTCCAGGTCAGCCTCAAACTGTCCGAGTTGGTACACCAGGAACAACCATACTGAAGGCTGGAACTGGAAACCTGGCAGGCAAACAGGTGATCACAGTACACAAAGCTGGAACAGTGACAAATCAGCCTCAAATTGTCACTCTGGTGAAGACCACACAGGGCATGACAGTTGCTTCAACTAAAGGAGGTATACCTCATGGAGCAACTATTGTCAAATTGGTTACAACACAGGCTGGATCAGGAAAAGCAGGAGGGACAGTTATTAGTCAGAGTCCAGGACAAACTCCATCAACAATTCTGGGAATTAGTAGTGTTCAGCCAAACCCTGTTGTTTCAAAGAATGTAACCAACATAATAAAAACAATTCCAACATCGATAATCTCCATGGCAAAAGTGGGTGGCAACAGTGTTACCACACAGGCTGGTACAAAAACCATTGTCATTACTGCACCAAAAGGCAGTGGTGGTACTCTCACAACACCAACGAAGATTATGACAGTTCCTAAACTTGGTGGTCATGGCAGCACACAGTTTATAGTTGTCAGCCCCCAGAGTGCAGCTGGGAAAGCAACAACACAGGCCATACTTGGTTCTGGAGGTAAAGCTGTAACTGTTTCAACACTGCCTTCATCACCACAGATTGTCACACCAGGAACAAAACCAGTTGTTACTTTACTTTCAAGTCAAGGTGGAAACATTTCAACAGCAGCAACTGCAAGTTCCACAATTCTGAATAACCCTGTTGTGAAAACTCCAGGTACATCAACCATTTCTCTAATAGCACAGCCATCATCAGGAATGACACCAACCTCGATTGTAACACGACAGATAATTGCAACGTCACATTCATCATTGGCTGGGACAGCGGGGAAGCCGGTTCAGATCACAATAACACCAGTGGGACAAAATGCAGCCCAAGTTCCAAAAACTGCAACAGTGACGACAATCACTACACAGCCTACAATCACAGAAGCTACTAGTGACGGACTCCAGCACGAAAGTGGTGAGGCCAGTGCAGGAGATTGTGGCAGGCCAGAAGGGTGTGGCACTCCTCCTCCAGGGGATTGTGGCAGACCAGAAGGGTGTGGCACTCCTCCACCAGGAGATTGTGGCAGACCAGAAGGATGTGGCACTCCTCCTCCAGGGGATTGTGGCAGACCAGAAGGATGTGGCACTCCTCCTCCAGGGGATTGTGGCAGGCCAGAAGGATGTGGCACTCCTCCTCCAGGGGATTGTGGCAGGCCAGAAGGATGTGGCACTCCTCCTCCAGGGGATTGTGGCAGGCCAGAAGGGTGTGGCACTCCTCCTCCAGGAGATTGTGGCAGGCCAGAAGGGTGTGGAACACCCCCTTTAGAAAATGGAGAAGACAATCCTCAACAGCAAATGGATGAAGGTCAGGAAAATACAGCAACTAGTACAGAAGGTGGAGTGCTGGAGCAGTTACAAGGCACTCAAGCCTCTGGGACTGACAGTTCTAATGCAGACCAGCCAATGGAGGGTGTGGCATCAGACGCTGGCCCAGCTTCAGAAGCCACAACCTCAGAAACTGGACAGGGTGATGCTCCTGAACCTATGGATACAAGTTTTGATCCTCATTTAAAGGTGAAGAAAGAAAGTGAAGATGGTTCGGGTGCACATCAGGAACATTCAGTAGAGAGTGCAGCTCAGCAGAAACCAGTGTTAACAAGTGATAGTTCAGATCCACTTGCAACATTAGCATCAGCTGCATCATCTTCAACACCAGCTATAACCACTGTCAAACAAGAACAGGATGTAGCTAATGGTGTAAAACCTGAAACTGATGTTAAACAGGAAAAGAATGTAGCTGTAAAACGTGATGGCAACCAGTGGTATGATGTAGGAATCATTAAAGGAACTACCTGCATTGTTTCTCATTATCATCTCCCATCTGAAGGAGCTCAGGGTAATGGTGATGACATAGATGTGGTGAATGTCCCAGATCACAGTATTTTGAAAAGACAAGAGCTTCAGCCTGGCACAGCCTACAAATTCAGAGTGGCAGGAATCAATGCATGTGGCCGGGGACCTTTCAGTGAAGTGTCCGCATTTAAAACATGTCTGCCTGGCTTCCCAGGAGCACCTTCAGCAATTAAAATAAGCAAGAGTACAGAAGGTGCACATTTGTCGTGGGAGCCTCCACAGAACACAGCTGGAAAAATAACTGAATATTCTGTGTACCTAGCAGTTCGGAATGCTGCAGCTACAGAACAGAAACCCGGAACTCCAGCTCAGTTAGCATTTGTGCGTGTTTACTGTGGTCCGAATCCATCGTGTGTTGTCACAACAGCCAGTCTGGCTTCAGCCCATATAGACTTTACAACAAAGCCTGCCATCATCTTCCGAATTGCAGCTAGAAATGAGAAAGGTTATGGACCTGCAACACAAGTCAGGTGGTTGCAAGATGCCAACCAAACAGCTACAAGTTCCAAAGTTGCAGTTAAAAGGGTTATTCCTTATGGGAAGCCAACAGTATCAGCTCAAGACAGTGCTATAAAGAAAATCAAAACTGAAGATGAAGGCTAGTCTTACAGGATTGATTCAATTCATCGTTGTCATTTGTTAACATTTTGCTGATTTCTTTTTTTTTCATTGGTTAAGTGGAATGGGCAGACAGAACACAACTTAGACTTTGCTTGGTGTCAGGAAAATTTCTCTTTGTTGTAAACTTCTTTTGTAGGTAGCGGTTTTCCTGTACATGTTTGTAAGGACTTTGTAAAAGGTGTTTTGGTGTATCTAAATATATTTTAAAAGGTTAAAAATCAATGAGAAAATGTTTTAAATGGGTGTTAAAAATAGAGCATTGTGAAAGGCAGTGTTAGGATTTAATAGAGAATGGAAATTTTGACAGGCTTTATTAAAAGTTACATGCTGCAGGGAATCTAAAAGTCTTTGGGACCTTGTTATATATAATACACAAATTCTTATGGAATGACAGGCAGAATTGTAACAATGCACTAGATATGTTTAAGAACAAATAATATTTTATCATCTTTTTATAGGTGTTGACTTCACCTAAAACTATTGAAAATTAGCTGCCTTTCACTTAACTACTGAAAGATCAAATCGGTAAAACCATTAATTCTTCATTCCTTGTTTATATACACGTTTCAGATGGTTTTCATACTACATTGTAATTATATATCTACCCATGAACATTTCTTTCTACCACCACTACAGTTATTTATATCAAAACACATGATTTTTTAAACATTTTTTCCTCACATTTACATTGTTTCTATGTATTAGTACATAATGATTAATTAGAATTTAGTAGCTTTTTAGCAGGATGTAATTAGAGATCTTATTATTAAACTAAACTGCTTTCAAGTATATGTTGTCTTGTATTAGGACACTGAAATGAATGTGTCATGTCTGGTGGGAGAAATCATTTCATTGATCTATCCCCAGAAAGTAATGTTACAAATTTAAATGTGTTTTCTTTAATATAATACTTATACTTATTGGTTTAAATTAGTTCTTTTCTAGTATCAAAAGTTCAATTGATTAAATTAACACTTTGTCTCCAGGATTCTTTTAAAATATTTTAAGAAAATTAAAATTATATCTGTAATTAAATAAAGAAATATTTGATAGTTGGCATTGATTCATGAAAACATCATATGTATCAAAATTCAGTATTGGGCATTCCTTGAATCTGTATTCAAAGTATATTTAAAAAAAAGTATTTTTACTTGCAAATTATTTTTTTAAGAAAAAGGAAGAAAGAACATTTATGAAGAAAATGAAAAAACAAACTTTCTCAGATGTTAAAAGAGAAAAACTGTTATGCCATATTTCATTTTCATTTAACATGTTTTATACTTCATTCTCTTTAGGAATGTAGATCTGTCCATATGTATAATAAATGTCATTTCCATTAACCTTTGTAAATATTCTCATAATCTGTCTTAATAATCCATTTTTGATTTTTTAGTATTTTATTACATAGCTGTATAGCTGTATGGTGTATATATACATTTAAAAAAAAAAATACATTTACATGCGTATAATGAGATTGGAGCAAGACCATGTTCATAGTTAAGCATAAACTTGACTCATTGAATGAAATCAACATTGGTCCCTTGATGATTTGTGAACAGAATAGGTGAGGGAGACTTTTAAAGGAACAAATGTTAAGACATTGTGAAATTTGTTTTTTAATTATTATTATTGTTATTATTACCCAAAGTGCATATGCAAATATAGCTTATTCTTAGTATGATATTAAATCCTTTGGTATTAAAGAAGTATACACTCTAGAAGATGACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01344	Kelch_1	Kelch motif	Repeat	Interproscan
PF13415	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan
PF13854	Kelch_5	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961	Domain	Fibronectin type III	Interproscan
IPR006652	Repeat	Kelch repeat type 1	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR015915	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR043536	Family	Host cell factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46003	HOST CELL FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0035097	Cellular Component	histone methyltransferase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf666_2.4 global RNA-seq network