Gene detail

Detailed information of CsqKR_Scaf65_28.16 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf65_28.16	MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN	chr6	22710830	22730353	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf65_28.16

ATGATTCTTTCAGAAAATGTAGCATACAAGCAGTTTACTCAACAGAGTTCCAACTACAGCCCCTCTTATTACCTGTCTGATAGAGCAGTCGATGGCAATCGTAATCAAAGACTCCGGGCAGGTTCGTGTGTTCACACTGATCTCCAAAAAAAAACTGCTTGGTGGGAAGTCTACATAAAACCTCCAAAGAGAATTCGTGAAGTCAAGATGTTTTATAGAGAAGTCTGCACCAAGTTAAAATTTTACTGTTACATGTTAGATCCATTGGTAGAGCATTTTCAATCTGATGATTCTCTTCAAGTTAAAGTGGAGTCAGAAGGGACACCTTCAACATCGGGTCAAACGTACGAAGTTTATACATACATCGAACTTTGCGAGGTGGAAGTCTATGTTTGCTCTAACGGGACTTTTGGCAGTGATTGCAGCCAGTTTTGCTTCTGTAGCGAAGGGACATGTGACTATTTAACTGGCCAGTGTCCAGGAAATGGAACTTGTGAAATTGGATTTACAGGAACTCATTGTGAAACAGACTGCGGTAGTGACAAAAGATATGGTGTGAACTGTTCGGAGAGCTGTGATGTAAGACACTGTTTTTCCCGTCAGGTCTGCGATCGAGCCGAGGGTCGCTGTGTAGATGGATGTCAAGATGGCTGGATAGGAACTGACTGTGTGACACCCTGTGAGCAAGGGTTCTATGGACAGAACTGTAGTTTGTCGTGTGGAAAGTGTACTGATATTTCACTGTGTCATCACGTTTCTGGTGTCTGTTCTGCTGGATGTCTGCCTGGCTGGGCTGGTGATACCTGCAAGAAAGATTGTGCAAATATGAGTCGCTATGGAGTGAACTGTTCCAGGTCATGTGATGATCGAAACTGTGATGGTCAGTCTGATTGTGACCGTGTGAATGGCACCTGTGTCCAGGGCTGTCTGCCTGGATGGACAGGGTGTGCTAGTGCAACGTATGGAGAAAATTGTTCACTGCCCTGTGGTCAGTGTTTGTCTGGGGGTTGTCATCACATAACTGGTAACTGTTCTGGTCATTGTCTCCCAGGTTTCCAAGGAGATCTTTGTACAGAAAAACTTTTAGCTTTGCCTTCAACTGGACTGGAAACTGGAGTCATTGGGGGAATAGCAGCAGGTTGTTTGGTCGTTGTACTTCTGCTTATTGCACTAGCAGTCATTCTAATAAAACGACGAAAACATAAGCCCAAGTCAAATTCAGCAGTGCAATCAAGGTTGGAGATAAATATGAACACAACAGAGGAAAAACCAGCAAAAGTTTCCAATTCTAAATCAAACGTGGGCTTTGATGGTGTGGAGACAGTTGCCTACATGAATGTAGAGGAGGACCGACATGAAACGTACTACAATGTCGACTTCTCTGCAGTGGCTACAGGAATTGACATCACCACACTGGCAAATCTCCTTGCAGAAACATCAGAGGACGATTTTCAGAAAGAGTTTAATCACAAATGTAGCCAGTACTGGCCAGAGACAAACAAGGAGTATGGAGATATCAAAGTCATTAAAACTGAAGAAATAGAGAAAACTTTTTACACAATTCGTCTTCTCAAATCTCACAACAAAAAGGAGCAGTATATATTTATATATAAAGCATTGCTAGAAGCATTTACTTATGGAAATACAATTAGAAATTATCATGAACTACAAAAGACCTACACACCAGACCTCACAATTGGATACAAAACACTGGACCAGCTGTGTCAGACTGTAATGGATGAAGCAAAGCAGTTTGGGATAATTGTATACTGTGAGAGTGTGGACTACACAAACCTATGTGACGAGACTGTCTGGAACATAATACTGGACAAACAGTGTTCTGTTGTGGTACTTCTTGTTGACAGTAAAGAGAATTCTGACAAAGCACTTTGTTGTAAGAAATCTGAAAATTATCAGTTTACTGAGTTCAACACCAAAAAGTTGTCTGATGATTTGAAGATTACCAAAACTGAGATTAAAAAGAAGGGTGAGTCTCAAGCTGTATGTTTTTGTACACTGTACAACTGGTCTGGTGATGTTCCCAGCTGCAACATGGCTTCTCTAAGAACCTTCATGCAAAGCATGGAAGATTCCTGGTTGTCAAATCCAGTTTTGGTTCTTCAAAGTAAAAACTGTTCCCAGCCAGGATTGTTTTGTATTCTGTTGAACGTACTTCAAGGTATTGAGTTGACAGGAGATGTGGAGGTGATTAATAATGCCAGGAGAGTTCTCAGACATTTACCACAAACAAACATCACACAGGAGGTAATCAAACACTGTTATTCTGTGGCCCTGTTTACAGAGGAGAGCAGTAACATCTACGCCAATGTGTAA

Transcript

CsqKR_Scaf65_28.16

TTTTAGTTAAGTTTCTATTCACAGTTGTTGTATAAAATGATTCTTTCAGAAAATGTAGCATACAAGCAGTTTACTCAACAGAGTTCCAACTACAGCCCCTCTTATTACCTGTCTGATAGAGCAGTCGATGGCAATCGTAATCAAAGACTCCGGGCAGGTTCGTGTGTTCACACTGATCTCCAAAAAAAAACTGCTTGGTGGGAAGTCTACATAAAACCTCCAAAGAGAATTCGTGAAGTCAAGATGTTTTATAGAGAAGTCTGCACCAAGTTAAAATTTTACTGTTACATGTTAGATCCATTGGTAGAGCATTTTCAATCTGATGATTCTCTTCAAGTTAAAGTGGAGTCAGAAGGGACACCTTCAACATCGGGTCAAACGTACGAAGTTTATACATACATCGAACTTTGCGAGGTGGAAGTCTATGTTTGCTCTAACGGGACTTTTGGCAGTGATTGCAGCCAGTTTTGCTTCTGTAGCGAAGGGACATGTGACTATTTAACTGGCCAGTGTCCAGGAAATGGAACTTGTGAAATTGGATTTACAGGAACTCATTGTGAAACAGACTGCGGTAGTGACAAAAGATATGGTGTGAACTGTTCGGAGAGCTGTGATGTAAGACACTGTTTTTCCCGTCAGGTCTGCGATCGAGCCGAGGGTCGCTGTGTAGATGGATGTCAAGATGGCTGGATAGGAACTGACTGTGTGACACCCTGTGAGCAAGGGTTCTATGGACAGAACTGTAGTTTGTCGTGTGGAAAGTGTACTGATATTTCACTGTGTCATCACGTTTCTGGTGTCTGTTCTGCTGGATGTCTGCCTGGCTGGGCTGGTGATACCTGCAAGAAAGATTGTGCAAATATGAGTCGCTATGGAGTGAACTGTTCCAGGTCATGTGATGATCGAAACTGTGATGGTCAGTCTGATTGTGACCGTGTGAATGGCACCTGTGTCCAGGGCTGTCTGCCTGGATGGACAGGGTGTGCTAGTGCAACGTATGGAGAAAATTGTTCACTGCCCTGTGGTCAGTGTTTGTCTGGGGGTTGTCATCACATAACTGGTAACTGTTCTGGTCATTGTCTCCCAGGTTTCCAAGGAGATCTTTGTACAGAAAAACTTTTAGCTTTGCCTTCAACTGGACTGGAAACTGGAGTCATTGGGGGAATAGCAGCAGGTTGTTTGGTCGTTGTACTTCTGCTTATTGCACTAGCAGTCATTCTAATAAAACGACGAAAACATAAGCCCAAGTCAAATTCAGCAGTGCAATCAAGGTTGGAGATAAATATGAACACAACAGAGGAAAAACCAGCAAAAGTTTCCAATTCTAAATCAAACGTGGGCTTTGATGGTGTGGAGACAGTTGCCTACATGAATGTAGAGGAGGACCGACATGAAACGTACTACAATGTCGACTTCTCTGCAGTGGCTACAGGAATTGACATCACCACACTGGCAAATCTCCTTGCAGAAACATCAGAGGACGATTTTCAGAAAGAGTTTAATCACAAATGTAGCCAGTACTGGCCAGAGACAAACAAGGAGTATGGAGATATCAAAGTCATTAAAACTGAAGAAATAGAGAAAACTTTTTACACAATTCGTCTTCTCAAATCTCACAACAAAAAGGAGCAGTATATATTTATATATAAAGCATTGCTAGAAGCATTTACTTATGGAAATACAATTAGAAATTATCATGAACTACAAAAGACCTACACACCAGACCTCACAATTGGATACAAAACACTGGACCAGCTGTGTCAGACTGTAATGGATGAAGCAAAGCAGTTTGGGATAATTGTATACTGTGAGAGTGTGGACTACACAAACCTATGTGACGAGACTGTCTGGAACATAATACTGGACAAACAGTGTTCTGTTGTGGTACTTCTTGTTGACAGTAAAGAGAATTCTGACAAAGCACTTTGTTGTAAGAAATCTGAAAATTATCAGTTTACTGAGTTCAACACCAAAAAGTTGTCTGATGATTTGAAGATTACCAAAACTGAGATTAAAAAGAAGGGTGAGTCTCAAGCTGTATGTTTTTGTACACTGTACAACTGGTCTGGTGATGTTCCCAGCTGCAACATGGCTTCTCTAAGAACCTTCATGCAAAGCATGGAAGATTCCTGGTTGTCAAATCCAGTTTTGGTTCTTCAAAGTAAAAACTGTTCCCAGCCAGGATTGTTTTGTATTCTGTTGAACGTACTTCAAGGTATTGAGTTGACAGGAGATGTGGAGGTGATTAATAATGCCAGGAGAGTTCTCAGACATTTACCACAAACAAACATCACACAGGAGGTAATCAAACACTGTTATTCTGTGGCCCTGTTTACAGAGGAGAGCAGTAACATCTACGCCAATGTGTAATCATTTTCCTTTAAAGGTTTTTAAAGAGTGAAATTTGCATCTGATGTCCATTATTCAGTTGACTTTTCTTCATTCAGACATTTCATCATGAAATAAACTGTCTTCCCAGATTCATGATCTGTGGAGTCTTTTGTGCTTATCATTGCCACTTACACTCATAAGTTATCAAGTTATTTTTGCTTCAACAGTTTTATCAATTTCAGTGAAGATATATTTTGTTACTGATATTAATATTATTTTTATAGTTTTTATTGTAAATGTATAATAAATAGTTTAGTTGAGTAACAGTGCTATCTTTATAATGATTTCTATATACTGCTTGTAAATAGAATTACCTTTGTTATTCGTGATCAAAAGTTGTATGTCTTTCAGTATGTCTTTAAAAAAAATATTTTTTAAAATGCATCTTAAGACAATGAAATATTTTAGTTTTCAAAAATCTCTTTCACTTTTCCAACCTTGCAATTTGTAGTTCAGAATTTGAATCCATAGAGGAATAAATAATTTTTTTTTTTTAAATTGTTTGTTAATATGTATTCACTACATATATCAATCATTCCATATTTCCAGTATAGTATCTCAAATAATATTAAGCTTCAGAGAAGATCCTTTTCAAAATCTGTAATAATCTGTTTTACAAACCATTTTTTAGATTTTGCAACTTGAGTTTAACAAACAGATATCACACCTGTAGTGGCTGTTTCCATTTTGATTTGAAACAAAATGTGCAAGCCAGATAGCTCACCTTTTCATTAAACATGCTGAATTTCTCATTGTTTTTCATATTTTTGTTAATATTTTGTTACATATTTTATTTCACTTTCATTTTAGAGATTTGTTTTTAATAATATTTTATTCTGACTTTTTTTTTTAAATATAATATATTTTTATATATATATATATAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR052108	Family	Multiple EGF-like domains/Integrin beta-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24035	MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf65_28.16 global RNA-seq network