Gene detail

Detailed information of CsqKR_Scaf65_11.18 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf65_11.18	HSC70CB, ISOFORM G-RELATED	chr6	24373887	24392579	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf65_11.18

ATGTCTGTAGTTGGAATTGATTTTGGAACGTCGTCTTGCTACATAGCTGTGGCGCGTGCAGGTGGCATTGAAACAATAGCGAACGAATATAGTGACCGTTGTACCCCATCATATGTTTCCCTTAATGAGAAGAACCGTGCCATTGGTGTGAATGCACAAAATCAAGCAATAACCAATTTTAAAAACACAGTTTTTGGCTTCAAGCGTGTCTTAGGGCGGAAGTTTTCTGATTGTGATGTTCAGAATGAAAAGGACCATCAATTCCGTGCAAATGAAATTGGTGAAGACCAAGATGGAAATATGATTTTTCAGCTCAGTTATTTGGGAGAAAAACAAGCTTTTACACCTGTACAGTTAACAGCCATGCTCTTCACACAACTGAAACATACTGCAGAAACTGCCTTGAAGACTAAAGTGGTGGATGTGGTTGTATCTGTTCCATCATTCTTCACTGATGCAGAGAGACGAGCATTGCTCGATGCATGTCAGATGGCAGGCTTCAACTGTCTACGGCTTATGAATGACACAACAGCTGCTGCTCTTGCTTACGGTATTTACAAGCAGGATTTGCCTGCAGAAAATGAGAAACCAAGAAATGTTGTTATTATTGATCTTGGCTATTCTTCACTGCAAGCTGCTGCAGTGGCTTTTCACAAAGGAAAACTGAAGGTACTTGCTACAGCTACTGATCCATATCTTGGAGGTAGAGACTTTGACAGGATTATTTTGGATCAGTGTACTAAAGACTTTATAGATAAATACAAAGTTGATGCAAAAAGCAAGCCAAAAGCATACATCAGGCTGATGACTCAAGTAGAAAAAATGAAAAAACAAATGAGTGCAAATACTGAGGCCATTCCTCTACGCATTGAGTGTTTTATGGATGATAAAGATGTTTCCACCAAAATGTCAAGAGCTGAATTTGAGAAACTGTCGGAGGGACTGCTTCTTAGAATAGAAGCAACACTGAAAGGCATTTTAGACAATGCTAACTTGAAACCAGGTGACATACATTCAGTAGAGGTGGTTGGTGGCTCATGTCGCATTCCTGCATTTAAGAGACTGGTCAAAGACGTTTTTGGGTTGGAACCCAGTACAACACTAAATTCTGATGAAGCAACTGCTAGGGGATGTGCTCTCCAGTGTGCCATTCTATCACCAACATTCCGAGTGAGGGACTTTGCAATCACTGACTGTCAGCCATATTCCATCACACTGAACTGGCAAGGAACCATGGAGGAAGACAGTTCAATGGAAGTATTTCCCAGATTTCATCCAGCTCCATTCTCCAAAATGTTGACATTTTATCGCAAAGAACCATTTCTTCTGACTGCTCAGTATACCTATCCAAATGAAATACCATATCCAACCACTAAAATAGGGTCATTCATGGTGAAAAATGTTGTACCTCAACCAAATGGAGAAAGTTCAAAAGTGAAAATAAAAATAAGAATTAATTCACATGGAATATTTGAAGTTAAATCAGCCTGTTTGGTGGAGAAGGTGGAAAATGAAAATGAGAAGACAAATGAAATGGAAACCATGGATGTTGATGAGGAAAAGAAAAATGGAGAAGATAGTGAGGATGCCATTAAAAAGCCAGGAGAAAAAGAAGAAGAAATGCAAATGGATCAACAGCAGTCACCTGCTGAATCTGCAAGTGAAACGGCTGATACAGCCTCACCAGAAAATCAGGATGCTGATAAGAAAACAACTCCACGAGGCAAAGAACAGACACAGAATAAGAAACCGAAGAAGACAGTGAGGCAAATTGATCTGCCTGTGGAAAGTTCTGTCCCTCAGTTAACAAAGAATCAGCTGAATACGTTCATTGAAAAGGAGAATGAAATGATGATGCAGGACAAACTAGAAAAAGAAAGGGCAGATGCTAAAAATGCAGTAGAGGAATATGTTTATGACATGAGAGACAAACTCAGTGGTCAATATGAGCAGTATGCAAAAGAGGAGGACCGCAGTGCGTTCAGTGAGCTTCTGACACAGACAGAAGACTGGTTGTACAATGAAGGAGATGATCAATCAAAACAAGTTTACATAGAGAAACTTGCTGAACTAAAGAAAATTGGCCAACCAATAGCTGACAGATTCAGAGAAGCTCAGGAAAGACCAGATGCATTCAACTTGCTTGGATCATCTATTCAGCAAGTTCGAAAATTCATTGACCAGTGGAATGGCAATGATGAACAGTTTAACCACATAGAAAAGAAGGATGTGGAGAAGGTACAGAAAGCACTCAATGAGAAAATGGAATGGTATGAACACAACTTGAACCTGATGTCAAACACTAAACCATATGACAATCCTGTTGTCCTGGTCTCCCAGATTCTTCAGCAAAAACAGGCTCTGGAGAACACAGTAACTCCCATCATGACAAAACCAAAACCAAAAGTAGAGCCACCAAAGGAGGAAAAAAAAAGTGAGGACCAGAAGGCTTCAGGAGATACAGAAAAGAAAGAGAAGGGAGAGCAGAATTCAGCAGAGTCTGAGACAATTAAACCAGATATGGATGTAGATTGA

Transcript

CsqKR_Scaf65_11.18

CGATAGTTCGCTATGATTCACGTGTTTCTGGAATCTTCTTGTTAAGTGTGTTCTGATGCGGATTTAAGAGGTCCTGTATTGTATGGGTGTCAGTACTACTGGCTTAGTATTTTAGAGTATAATAACAGTTTTGTAAAGAAGTTCTTACAGTTTCAAAAATGTCTGTAGTTGGAATTGATTTTGGAACGTCGTCTTGCTACATAGCTGTGGCGCGTGCAGGTGGCATTGAAACAATAGCGAACGAATATAGTGACCGTTGTACCCCATCATATGTTTCCCTTAATGAGAAGAACCGTGCCATTGGTGTGAATGCACAAAATCAAGCAATAACCAATTTTAAAAACACAGTTTTTGGCTTCAAGCGTGTCTTAGGGCGGAAGTTTTCTGATTGTGATGTTCAGAATGAAAAGGACCATCAATTCCGTGCAAATGAAATTGGTGAAGACCAAGATGGAAATATGATTTTTCAGCTCAGTTATTTGGGAGAAAAACAAGCTTTTACACCTGTACAGTTAACAGCCATGCTCTTCACACAACTGAAACATACTGCAGAAACTGCCTTGAAGACTAAAGTGGTGGATGTGGTTGTATCTGTTCCATCATTCTTCACTGATGCAGAGAGACGAGCATTGCTCGATGCATGTCAGATGGCAGGCTTCAACTGTCTACGGCTTATGAATGACACAACAGCTGCTGCTCTTGCTTACGGTATTTACAAGCAGGATTTGCCTGCAGAAAATGAGAAACCAAGAAATGTTGTTATTATTGATCTTGGCTATTCTTCACTGCAAGCTGCTGCAGTGGCTTTTCACAAAGGAAAACTGAAGGTACTTGCTACAGCTACTGATCCATATCTTGGAGGTAGAGACTTTGACAGGATTATTTTGGATCAGTGTACTAAAGACTTTATAGATAAATACAAAGTTGATGCAAAAAGCAAGCCAAAAGCATACATCAGGCTGATGACTCAAGTAGAAAAAATGAAAAAACAAATGAGTGCAAATACTGAGGCCATTCCTCTACGCATTGAGTGTTTTATGGATGATAAAGATGTTTCCACCAAAATGTCAAGAGCTGAATTTGAGAAACTGTCGGAGGGACTGCTTCTTAGAATAGAAGCAACACTGAAAGGCATTTTAGACAATGCTAACTTGAAACCAGGTGACATACATTCAGTAGAGGTGGTTGGTGGCTCATGTCGCATTCCTGCATTTAAGAGACTGGTCAAAGACGTTTTTGGGTTGGAACCCAGTACAACACTAAATTCTGATGAAGCAACTGCTAGGGGATGTGCTCTCCAGTGTGCCATTCTATCACCAACATTCCGAGTGAGGGACTTTGCAATCACTGACTGTCAGCCATATTCCATCACACTGAACTGGCAAGGAACCATGGAGGAAGACAGTTCAATGGAAGTATTTCCCAGATTTCATCCAGCTCCATTCTCCAAAATGTTGACATTTTATCGCAAAGAACCATTTCTTCTGACTGCTCAGTATACCTATCCAAATGAAATACCATATCCAACCACTAAAATAGGGTCATTCATGGTGAAAAATGTTGTACCTCAACCAAATGGAGAAAGTTCAAAAGTGAAAATAAAAATAAGAATTAATTCACATGGAATATTTGAAGTTAAATCAGCCTGTTTGGTGGAGAAGGTGGAAAATGAAAATGAGAAGACAAATGAAATGGAAACCATGGATGTTGATGAGGAAAAGAAAAATGGAGAAGATAGTGAGGATGCCATTAAAAAGCCAGGAGAAAAAGAAGAAGAAATGCAAATGGATCAACAGCAGTCACCTGCTGAATCTGCAAGTGAAACGGCTGATACAGCCTCACCAGAAAATCAGGATGCTGATAAGAAAACAACTCCACGAGGCAAAGAACAGACACAGAATAAGAAACCGAAGAAGACAGTGAGGCAAATTGATCTGCCTGTGGAAAGTTCTGTCCCTCAGTTAACAAAGAATCAGCTGAATACGTTCATTGAAAAGGAGAATGAAATGATGATGCAGGACAAACTAGAAAAAGAAAGGGCAGATGCTAAAAATGCAGTAGAGGAATATGTTTATGACATGAGAGACAAACTCAGTGGTCAATATGAGCAGTATGCAAAAGAGGAGGACCGCAGTGCGTTCAGTGAGCTTCTGACACAGACAGAAGACTGGTTGTACAATGAAGGAGATGATCAATCAAAACAAGTTTACATAGAGAAACTTGCTGAACTAAAGAAAATTGGCCAACCAATAGCTGACAGATTCAGAGAAGCTCAGGAAAGACCAGATGCATTCAACTTGCTTGGATCATCTATTCAGCAAGTTCGAAAATTCATTGACCAGTGGAATGGCAATGATGAACAGTTTAACCACATAGAAAAGAAGGATGTGGAGAAGGTACAGAAAGCACTCAATGAGAAAATGGAATGGTATGAACACAACTTGAACCTGATGTCAAACACTAAACCATATGACAATCCTGTTGTCCTGGTCTCCCAGATTCTTCAGCAAAAACAGGCTCTGGAGAACACAGTAACTCCCATCATGACAAAACCAAAACCAAAAGTAGAGCCACCAAAGGAGGAAAAAAAAAGTGAGGACCAGAAGGCTTCAGGAGATACAGAAAAGAAAGAGAAGGGAGAGCAGAATTCAGCAGAGTCTGAGACAATTAAACCAGATATGGATGTAGATTGATGAAGAGAGGATGTTAAATAACTGAACAAAACTGCTTTGTTGTAATTGCATCTGTTTACTTGTTATATGGCTGAATTATCTGAAAAAAATGTTTAAAAAAAACAACAAACAAAAAAACTCACTCATTTGTTAAATGGTCACTAATATAAATAATGTACAATATAATGCTTGTTTGCTAATTGTATAGGTGCAGTACTATGTCATCTCAAGTCAAAGAATAAACAAAACATTTGTTATAACTGTTTTAATTTCATCTTGTGTCATGACATAAAAATTGTTACAGGGACTGTAAAGTATTGTTATATTTGTGTAGCATGTTAGCTAAACTGGATTACTGAATTACTGTTTTTACACTCATCCTGGAAATGAGATGTTTTATGGATGAATATTTTGTAATGAAAAGAAAAGGCTAAGTTCATTTTTGGTCTCTTGTTAAGTTTTTGTATTAACTGTATCCAGAATAAGTGCTACGTTTTTCCACTGTTCACTGGTTGACCATTATTCCAATTGTCTCGATTGCAGTCACAAATGAATCATTTTTAACATTTTTAATGGTAGATTAATAAATGTGTACTGAGAATAAACAAGTGCTTGTTAGTCTTTATTGGCACAGTATGAATTACATAGTTCATCTACAGTTTAAAGGGCATTACAATGAATGTTATAAATATTAGTTACAAGATATCAAAAAAATAATTAGCTTGCAATGTTCAATCTTTTTCTTACTAGTTATTCCAAAGTAGTTCAAGTGTTTATATATTTTTTGTTGCACATTGATTACAACAGTAACAAATTTCTCTTAATGTGTTCAACTACATAAAATGGTAAGAAGTAAGTTTAAATAATTAATGTGGTAAATATTTTCAACTTTTGTCATAAGATTATTAAATGTTTATCAAAAGTCTGTGAATGTTGTTATCCATTTTTGAGGCATATTAGTGTATTTTATTATATATTTAAATGATTAATTCCAAAAAAATTCTTGAAATATTTTAAAGAGGATATTTTTAACATTCTTTGTGCAAAAATAGATAAGCTTTAATGTGCAAAAGTTAGAAAGCACCTGTCAAATACTCGGCTGCATTCTATTACACGCATATGTATACATACAGCAAATGTGCAGTGGAAAATTGTCTCCACAACAAATGCCTGTACATTTTTTTTCACCTCTAGGAAAATAATATGCCTTGTAGTTAAATTTGTGTAGTAATAAATAAAAATAAGTTTTGCCTTGCACACAACCATTTTTTTTTTAAATTTAAAAACTACAGATAAATCAGAAAGTTTCTGTAACAGAATTTAAACTAGTGGTTAATGTCAAGAATAAAATGGTTCTATTTTAATGACAACTACAGTGTACAACCGTTAATAGATTTTTTTCTGTTCTTTTCTCAAATGTTTATAAACGTTTTTTTTATTATTAGTCTTGCTTTTTTGTTTTTCAGTTATGATCTGAAAATTTACATCGTGAAAAACAACAAAATCAATCACTGTACATTTGTATTTGTTATGGCACAGTGAATGTACATCTGAATTGAAACAAAATGTAAAATAGCTCACCAGTCATAATGCTTGAAAGATAACTACACTGATCTGAAAACTCCTTTCTAAATTACAGCATCTATTTACAAATATTTAAGAAAAATTCACTAGTACTGTATTTAATAAAATGCATATTGCAGGTGAAATATTTATGGGACCTTCATTCCTGGGCACAACTGTTGTGATGTATAAACATTATCAAAAAGGTGCAATCAATTTTGAAAGTTAAATATAGAATGTACATTTTATTGAAGTCGTATTTAAGAAAATGTAAATATAAGATGCAATTCATCAGTCCTACTTTTGCTATCCACCAGCCCATTTTATAACATGCATCTTTCAAATTATTTATTGAAAACCATATACATATCGTATGGACAATACTTTTTCCTGGTATGTAATACTTTATTTGTAGAAATATTAAAGTTTGCCATGTATTTGTGTCCAAGTGTTTTCATTGTCTTAGTCCAGAACAGATAAGACCATTTTCCAGTTTTCTGGACCTAGGTAAACAATGATATTGCATTAACTTCAAAATCACTTTTGCTAGAATCCTAATAAATGATCTGGAAGAATTTTTTCCAAAGCAATTTGTCCATTATAAAAATTAACTTAATGCAGAATCGGAACTGTCTTCAATATCTATTCATTTTATTCAACTTTTCTTTGCATGATCAAGGACATTTTGATATTATTGCCTAAAAGCAGGTTAGCATTTTCAGATCTTCAACTTATGGAAATCTGTTGAAAAAAAGCAATTTCATTCTAAAATTACATTTTTCACTTTATTATGAATGTCAAAATTCAAACGCCAGACAACTCTGATTAAAGCAAATTTCATTACACCAACTAGTTTCACCTGATTTGTTTTGGTGTTTTGTCTAGTTTTAGAATTTATTCATTCAGTAGAAACAGTTTAAGTGCAGTTTAGTTGGACAATATTCTTTAATTCGCAAACACTGGAGAGGAGTGGACTAATACAGCAACATTGCCAGTTTAACAAAATATTTAAAAAAAAAAAAAAAAAAGTTCTGTAAATTTTCATAAACTATGAATTTGCAAGCAATACAGCATTCATTACATAGATTGAAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00012	HSP70	Hsp70 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013126	Family	Heat shock protein 70 family	Interproscan
IPR029047	Homologous_superfamily	Heat shock protein 70kD, peptide-binding domain superfamily	Interproscan
IPR029048	Homologous_superfamily	Heat shock protein 70kD, C-terminal domain superfamily	Interproscan
IPR043129	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR050451	Family	Heat Shock Protein 70 (HSP70)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45639	HSC70CB, ISOFORM G-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0140662	Molecular Function	ATP-dependent protein folding chaperone	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf65_11.18 global RNA-seq network