Gene detail

Detailed information of CsqKR_Scaf64_33.16 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf64_33.16	THREONINE SYNTHASE FAMILY MEMBER	chr8	8861936	8870323	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf64_33.16

CATCCTACAACAATTTCACTATTTTATGTATTATTTTATATTTCATATTTTTATTCTAACTATGGTCGAGAACATTTGATTATATTCCTAACGTTTAGATTTATCTAGAATCATGTGCTGATCTGGAAAATCTACCTAAACTTTTAAACAGACGTCTAGACAGAAAATCAGGACAAAATTAGTATTTAGTTGAAGAGTTAGCGACATTTGTCAGATTCCTCGACAGATTTATTGTAATGTGGGAATAGTTACATATAAACATGTAACTTGTACAGAGTAAAGACAGTAATCAGCTAGAAGCCCCCAGATACTTAGTTATATAACCGACGACGAGATACAGTCCCACTGTTGTTTGACATCTAGCTTATTACATGACTAAAGCGTTTAATTTCAACTACAGCTGCCATCTGCACTCGACGTAAAACTGTCACTGTAACCTTTCAGTGGGCTGTTGATTGAACACGAGGGAGATTTTCTGGTACGCCAAACGATTTAGGAAATGAAGTACTTGAGCACAAGAGGAGCGGTTTCTGGTCTGTCATTCGAGGAGGCTTTGTGTTCTGGTTTTGTCGAAGATGGAGGAATCTTGATGCCAGAATCAGTGCCAGCGATCTCACTAGACACACTAAAATCCTGGCGCGGTTTGTCTTACTCTGATTTAGCGAAGCAGATTGTACCAATGTTTGTTGCTGAAGACGAAATACCAGAGAAAGATCTTTTTGATCTAATTGATGTGTCTGTAACAAAAATCAAACATCCAGACGTTGCTCCGATTGCTAAACTTACCAAAGGTCTCAACATTCTTGAACTCTTCCACGGCGTCACTTGGGCTTTCAAGGATCTTCCTTTGTCCTTCGTGGGAACCTTTTTGTCGTACTTTTTACAAAAGAGAAAGAAGCACATAACAATTTTAGTAGCCACATCCGGGGACACAGGAAGTGCCGCGGTGGAAGCTGTCCGCGGCCTTGATTGGATAGATATTATCTGTCTTTTTCCAAAAGGTCGATGTACGAAGATTCAAGAACTACAAATGGTAACAGTAACTGATGACAACGTTCATGTTTATAGAGCTGAAGACAGTTCCAGCGACTCTCTTGACGGACTGATGAAAGATTGTTTTGCAGACGTAGAGTTTGCGCAGAAACATAACTTAGCTTCCATCAACTCTATCAACTGGGCAAGAATCATGATGCAGATTGTTCATTATTTTTACTGTTACTTGCAGATTTGTGATGTGTGCGGCGAAGAAATTGAAATTGTTTTTCCAACAGGAGGATGTGGAAATTTAACAGCTGGCTGCTTTGCAAGGAAAATGGGACTACCTATAAAAATCGTATGTACACTGAACAAAAACGATGGAGTCGCGCGGATTATTGAGAAGGGAGATTACTCTCTCGAACCTGTGAAGATTTCTCTCGCTCCAGCCATGGACATACAGTTGATTCTCAACATAGAGAGGATCTGGTATTTGTTTTCTGATGGGGATTCTCTTCTGGTCTCACAACTTATGAAGCAGTTAGAAGCAACAGGAAAAACCCACGTTCCAGAACCAATAAAACAAAAGATACAGTTAGTTGTAAGTACATTTGTTGTCGAGGATGAGGTGATAAAGAAGACGATGAAGAGGTGCTATGAAGAAAATAACTACCTGATATGTCCACACACTGCTACAGCTGTGACCTATCACTACGACAAACTGGAGAAAACACGAAGTGATGAAATTAAAGGACAAATCTGCATTGCTACTGCTTCTCCACTGAAGTTTGAAGAATGTGTCAGAGCAGCTGGACTGGAAGTGCATTCAAACGAGTCAGTGTTGAGACTTCAGTCTTTGCCAGTCAAGTGTTTAGACCTGCTAAACAACACTGACAGGAACTGTGAGTTTAGGAAGAAGATTGAGGAAATAACAAACACGTTTCTGTCTAGAAATCTCTCCTGAGAAATCTGACAGAGTGGTGTATACATACATGCTTTGTGTATACATACATACATTGTGTATTCTGGGAGAAGGGATCGCGATATGCTACACATAATTTCTAAGACGAAATTAATAAATAACAATGAATGTGTAAATAGGAATACAATGGGGCAAAAATTTAAATTCTACATAAAAGGCTTACGCCAAAAAGTATTTGCCTAACCTTTTTTTTTTTTTGGGTGGGGGGAAGGAGAAATAATGAAATTGTATTTTTGATTTTTATATATTAATAATAATGTGCATACTAAGCAGTATGACTGAAATAAATGAAGTAATGCAGTTAAAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00291	PALP	Pyridoxal-phosphate dependent enzyme	Family	Interproscan
PF14821	Thr_synth_N	Threonine synthase N terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001926	Domain	Tryptophan synthase beta chain-like, PALP domain	Interproscan
IPR004450	Family	Threonine synthase-like	Interproscan
IPR029144	Domain	Threonine synthase, N-terminal	Interproscan
IPR036052	Homologous_superfamily	Tryptophan synthase beta chain-like, PALP domain superfamily	Interproscan
IPR037158	Homologous_superfamily	Threonine synthase, N-terminal domain superfamily	Interproscan
IPR051166	Family	Threonine Synthase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42690	THREONINE SYNTHASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0009071	Biological Process	serine family amino acid catabolic process	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0046360	Biological Process	2-oxobutyrate biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf64_33.16 global RNA-seq network