Gene detail

Detailed information of CsqKR_Scaf63_13.10 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf63_13.10	MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A	chr1	38739028	38749161	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf63_13.10

TTGATTTGCAGACAGTTGTTTATTTTTATTTTTACAAATATTTTTATACAGATTGATACTCCTTCAGAGAAACAGCTTGCTGATGATAGAAGTTTAGTTCGGCCATTTTCTGATTTCTTGACTGACACTTTTGGTCGACAACACACGTACTTAAGAATATCACTGACAGAGAAATGTAATCTGAGGTGTCAGTACTGTATGCCAGCTGAAGGTGTTGACCTGACGTCCAAAGAGAACTTACTGACCACTAAAGAAATCCTTGACCTTTCTCGACTGTTTGTAAGACAGGGGGTCACAAAATTGAGACTCACTGGTGGAGAGCCTCTAGTGAGACCAGATGTAGTTGAAGTTATTAGAGGTCTGAATGATTTGAAATCCGAAGGACTACAATCCATTGCTATGACGACAAATGGAATAACACTGACAAGAAAACTCACACAACTAAAGGAAGCAGGCCTGAACCACTTAAACATCAGTCTGGATACACTGATACCAGCCAAGTTTGAATTCATCACAAGAAGGAAAGGATTTGACCGAGTACTCATGGCTATTGATAAAGCACTAGAGTCTGGGTTTTCTCCTGTTAAGCTGAACTGTGTTGTTATGAGAGGCACCAATGAAGAAGAAATTTGTGATTTTGTTGCAATGACTGAAAATAAGAACATTGATGTGAGGTTTATTGAGTACATGCCTTTTGGTGGCAACAAGTGGAATTTTAAAAAGATGGTTCCGTATCAAGAGATGCTGAACACAATTAAAGCAAAATGGCCACAGGTTGATAAACTGCAGGATCAGCCCAATGATACAACCAAGGCTTACAAGATACCTGGGTTTGAGGGTCAGTTTGGTTTCATTACATCTATGAGTGAACATTTCTGTGGAACTTGTAACAGGCTGAGAATCACAGCAGATGGAAATCTGAAGGTTTGTCTCCATGGCAATGCTGAAATTTCACTGAGAGATGCTTTGAGAAATGGCATGGATGAGGAAGAAATGATGAATATTATTGGAGCAGCTGTTAAAAGGAAGAAGAAACAACATGCAGGTATGCTAAATTTATCGAAGATGAAGAACAGACCCATGATACTCATTGATTCTTCTTATCCTTCAACAAACAAGATTTTATTTGATTTATCCCAGAATGTGATAGCGCACAACTCTATAGAACAATCAGGTTTATTTTCTTTTTTACCTAACTTTTTATATTCATGTCATTATCTAATACAGAGCAATAAACTGAAAACTGTTGTAATGAAAGGTGATGCTGGTTTAATCGGTGGAAGAATTTTCACATGTATCCAAGGAAGTAACCACAGAAACACTGGAATCATCAGAACATTTTCAACTACTTCCAAGTTGTCAGATTCTGATAATATGAAAGGTGTTGAAAATACAACAATTAAAAATGAAAGAGACAAATCTGAGAAGTTTGCAAGAAACCACAATGTTAACATAGATGAGACCACTAAATACTGGGAAATGGACAGAAGACAAAGATGTGGATCAGAAGAAATATTTCAGCTGCATAAGATAGCTGGCAGCAATTTAAATGATAACATCTTCTGTAACTGTGGCATGAATTACTGGGAGTTGGACAGAAGAGAAAGAATCATGCAAGACTTGATTGTAGAAGAGAATTTTCCTGATCAGAAATTTCCTGTGGATCAGATTTGGGAATCTCTTGGGACGGGGGGATCAAAGAATTATTATGCCGAGCTGAAATCTGATTCTTCTGCAAAATATATAAATAACCATGGAGACAGCGTAGAATCCTGTCTGACTCACACTGATGACCAAGGCAAAGCAAACATGGTTGATGTAGGACTCAAACCAGACACACAGCGTACAGCTGAAGCACAGGGAATTATTTTCCTTGGGGAACAGGCTTACATGTTAGTCAAGGAAAACAAGATGAAGAAGGGAGATGTGTTTTCTGTGTCACAAGTAGCTGGCATAATGGCAGCCAAGAAAACAGCAGAACTGATTCCACTTTGTCACAATATCAATTTGTCCAAAATTGATGTGTCATTCTCACTACTGGAAGACAGTTACAGCATCCTTATAAAGTCTAGAGTGAAGATGTATGGTAAAACAGGGGTGGAAATGGAAGCTCTGACTGCTGTGTCTTTGGCTGCACTGACAATTTATGACATGTGTAAAGCTGTGACACGGGACATGGTGATAAGTGATGTGAAACTTGTTCTAAAAACCGGTGGTCAGAGAGGGGACTATTCTGTCCATGATAAGACTGGTGGTAAAATTTCTGCAAACTGA

Transcript

CsqKR_Scaf63_13.10

ATTTGATTTGCAGACAGTTGTTTATTTTTATTTTTACAAATATTTTTATACAGATTGATACTCCTTCAGAGAAACAGCTTGCTGATGATAGAAGTTTAGTTCGGCCATTTTCTGATTTCTTGACTGACACTTTTGGTCGACAACACACGTACTTAAGAATATCACTGACAGAGAAATGTAATCTGAGGTGTCAGTACTGTATGCCAGCTGAAGGTGTTGACCTGACGTCCAAAGAGAACTTACTGACCACTAAAGAAATCCTTGACCTTTCTCGACTGTTTGTAAGACAGGGGGTCACAAAATTGAGACTCACTGGTGGAGAGCCTCTAGTGAGACCAGATGTAGTTGAAGTTATTAGAGGTCTGAATGATTTGAAATCCGAAGGACTACAATCCATTGCTATGACGACAAATGGAATAACACTGACAAGAAAACTCACACAACTAAAGGAAGCAGGCCTGAACCACTTAAACATCAGTCTGGATACACTGATACCAGCCAAGTTTGAATTCATCACAAGAAGGAAAGGATTTGACCGAGTACTCATGGCTATTGATAAAGCACTAGAGTCTGGGTTTTCTCCTGTTAAGCTGAACTGTGTTGTTATGAGAGGCACCAATGAAGAAGAAATTTGTGATTTTGTTGCAATGACTGAAAATAAGAACATTGATGTGAGGTTTATTGAGTACATGCCTTTTGGTGGCAACAAGTGGAATTTTAAAAAGATGGTTCCGTATCAAGAGATGCTGAACACAATTAAAGCAAAATGGCCACAGGTTGATAAACTGCAGGATCAGCCCAATGATACAACCAAGGCTTACAAGATACCTGGGTTTGAGGGTCAGTTTGGTTTCATTACATCTATGAGTGAACATTTCTGTGGAACTTGTAACAGGCTGAGAATCACAGCAGATGGAAATCTGAAGGTTTGTCTCCATGGCAATGCTGAAATTTCACTGAGAGATGCTTTGAGAAATGGCATGGATGAGGAAGAAATGATGAATATTATTGGAGCAGCTGTTAAAAGGAAGAAGAAACAACATGCAGGTATGCTAAATTTATCGAAGATGAAGAACAGACCCATGATACTCATTGATTCTTCTTATCCTTCAACAAACAAGATTTTATTTGATTTATCCCAGAATGTGATAGCGCACAACTCTATAGAACAATCAGGTTTATTTTCTTTTTTACCTAACTTTTTATATTCATGTCATTATCTAATACAGAGCAATAAACTGAAAACTGTTGTAATGAAAGGTGATGCTGGTTTAATCGGTGGAAGAATTTTCACATGTATCCAAGGAAGTAACCACAGAAACACTGGAATCATCAGAACATTTTCAACTACTTCCAAGTTGTCAGATTCTGATAATATGAAAGGTGTTGAAAATACAACAATTAAAAATGAAAGAGACAAATCTGAGAAGTTTGCAAGAAACCACAATGTTAACATAGATGAGACCACTAAATACTGGGAAATGGACAGAAGACAAAGATGTGGATCAGAAGAAATATTTCAGCTGCATAAGATAGCTGGCAGCAATTTAAATGATAACATCTTCTGTAACTGTGGCATGAATTACTGGGAGTTGGACAGAAGAGAAAGAATCATGCAAGACTTGATTGTAGAAGAGAATTTTCCTGATCAGAAATTTCCTGTGGATCAGATTTGGGAATCTCTTGGGACGGGGGGATCAAAGAATTATTATGCCGAGCTGAAATCTGATTCTTCTGCAAAATATATAAATAACCATGGAGACAGCGTAGAATCCTGTCTGACTCACACTGATGACCAAGGCAAAGCAAACATGGTTGATGTAGGACTCAAACCAGACACACAGCGTACAGCTGAAGCACAGGGAATTATTTTCCTTGGGGAACAGGCTTACATGTTAGTCAAGGAAAACAAGATGAAGAAGGGAGATGTGTTTTCTGTGTCACAAGTAGCTGGCATAATGGCAGCCAAGAAAACAGCAGAACTGATTCCACTTTGTCACAATATCAATTTGTCCAAAATTGATGTGTCATTCTCACTACTGGAAGACAGTTACAGCATCCTTATAAAGTCTAGAGTGAAGATGTATGGTAAAACAGGGGTGGAAATGGAAGCTCTGACTGCTGTGTCTTTGGCTGCACTGACAATTTATGACATGTGTAAAGCTGTGACACGGGACATGGTGATAAGTGATGTGAAACTTGTTCTAAAAACCGGTGGTCAGAGAGGGGACTATTCTGTCCATGATAAGACTGGTGGTAAAATTTCTGCAAACTGATGAATTTTAATTGTTTAGTGTTTGTTCGATGATTCCAGATCACAGTAAATCAGTTATTCTGTTACAACATTTATGTGTTGTTTTTCTCTAAGTATGATGTTTGATTAATAATTTATACATCTTTTTTTTCAAAGATATTCTTGAACAGAAGATTATGTTATGTGATTGTTTGAATTGTTTATATAATGTAAGGGTTTTAATCCTATCAGTGCCTAAGAACTATAGTATGCTTTTTATTTTTTTATTTGCATCAATTAATGGGTTTTTTTTATTATTTTTGTGATATTATTCAAGATGATCAAATTGAAATGTAAGCATGCATTATATCTCTAATTATCTGCACTGATTAAAATCAGAGACTACCAGTAAGATCATTTAGTCAGTTTTCACAATATACTGTATAGTTAACATTAAATGAAAAATCATTTTAATGAGCATTGTACTGGTACACAATGAAAAATATACTATATTTTTACTCATTAATTAATATAACAGTAGGTTAAAAATGCATTTACCAATGAACCTTGTATTAAATTTTTTATTTTAAATCAAGTATTTAATTAGATAATACTCCTCAGGTTTTTGTCTAGTAAATAATTTTAATGGATTTTTTTTCTTATCTTTTTTCTTTTTTTTGTATCATACTCTGTAACATACATAATTAGGTTTGAAATTTAACCACAACTAACATTTTGATGACAGAGTAGGTATGTAAAGATACGTTTCCTGGTATTTTTGTTTAGTCTGGCTGTGAACACTCTTCTCACTGTGTGTAATGTTTTCAGAAAATGGCCTAAACATAATTTGTGTCTTCTCGTTTCCCAGCATACCTGTGGGTTCAACTGATTATGAAGAAAAACATGCATTTGATAATGGCATTAATTTAAGCTTATTTTATATTTTGTCATATTTTGGGGTGACGGATATTATTGTGCAGTTAAAAGAGCACAATTATTTTTATACATTTGAAAAGTTTTTTAATAGATTTTTTAAACATTTTTATTTTATTTTATTATCTTCAATTTGTCATATATTTTTTTATGACAGTGAATGATACATTTTTTATATTTACTTTTTTTTTTACTTTAATAATTCAATCTGAAGTATATTCCAGTCCCACAGAATGATAATTATCTTAATAAATGAATACAATAGTTAACAAAATGGTTGAAGTCTTGTAATATGCCTTTTTACTATTGTTTTCTTGATTTATTTTTAATAGATTTGTACTGTTTTATATACATATTTGATTTTATCACTTACAATTGTTATAATTTTGTTTTGTGATATTCTGTTATCTTGTGGTTGATGAAGTTTTATTAATAAAAAATCTGAAATTTGAAAATGGAAATTTGTGGTTGGTAAGTTTCGAGAGTTGGAAGTTAAATAAAAATTTAAAAATGAGAAATTTATGAATTTTGGAAAAACATAATATACTTTGTGATATTAAAATTTTTAATTAAAACAATAAAAGAGAAAATCTAAAATTAAAAGATGAATAAAATTTTGATTTTGAAAGGAGAAAATGAAATCTTTAAAAGAAAGCCCCCCCCCAAAAAAAAAAAGCAAGAAAAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01967	MoaC	MoaC family	Family	Interproscan
PF04055	Radical_SAM	Radical SAM superfamily	Domain	Interproscan
PF06463	Mob_synth_C	Molybdenum Cofactor Synthesis C	Domain	Interproscan
PF13353	Fer4_12	4Fe-4S single cluster domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000385	Conserved_site	MoaA/NifB/PqqE, iron-sulphur binding, conserved site	Interproscan
IPR002820	Domain	Molybdopterin cofactor biosynthesis C (MoaC) domain	Interproscan
IPR006638	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR007197	Domain	Radical SAM	Interproscan
IPR010505	Domain	Molybdenum cofactor biosynthesis protein A-like, twitch domain	Interproscan
IPR013483	Family	Molybdenum cofactor biosynthesis protein A	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR023045	Family	Molybdenum cofactor biosynthesis C	Interproscan
IPR036522	Homologous_superfamily	Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily	Interproscan
IPR047594	Family	Molybdenum cofactor biosynthesis C, bacteria/eukaryotes	Interproscan
IPR050105	Family	Molybdenum cofactor biosynthesis MoaA/MoaC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22960	MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0006777	Biological Process	Mo-molybdopterin cofactor biosynthetic process	Interproscan
GO:0019008	Cellular Component	obsolete molybdopterin synthase complex	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0061798	Molecular Function	GTP 3',8'-cyclase activity	Interproscan
GO:0061799	Molecular Function	cyclic pyranopterin monophosphate synthase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf63_13.10 global RNA-seq network