Gene detail

Detailed information of CsqKR_Scaf61_54.32 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf61_54.32	KATANIN P80 SUBUNIT	chr3	12752883	12776969	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf61_54.32

ATGTACAAGTTTTATTTAGTAGCTGCCATTATGAGACTTGGTCTCATTGCTTATGGACACTGGCAAGATGTGACAATGGCTGTGAAATTCACAGATGTTGACTATTATGTCTTTACTGATGCAGCTAAATTTGTGGCTGAGGGAAAATCACCATATGACAGATCAACCTATCGCTATACTCCACTTCTTGCATATCTTCTTCTTCCAAATATTTGGTCTCCTGTGTTTGGTAAACTTCTTTTTGTATTTTTCGACATCATCACAGGAATTCTTATCAACAGAATCTCATTTTCGAATGGAAGCTCACCAAAAATGGCTGCCATCTGTTCCTGTTTATGGTTGATGAATCCCTTGACAATGACAGTATCTTGTCGAGGAAATGCAGAATCCATTCTGACATTTTTGATCTACAGGAGTTATCTTCCCTACATCAGCAGCAATTTTATTTGGTATGGATGGAAGTTCCTTTATGAAACGTATATTTATCACATAGTCCGTCAAGACTTGAGACATAATTTCTCTCCATATTTCTACATGATGTATTTGTCTGGAGAATCACAAACATCTCTGTTTGTCAGAGTCCTGGCATTTATTCCCCAGATCTTGTTCCATGTCACAATATCAGCCAAGTTTTATAAAGACCCACCATTCTGTTGGTTCCTCAACACTTTTGCTTTTGTTGCAGCAAATAAAGTTTGTACTTCTCAGTTTTATTTATTCCAGTATTTTCTTTGGTATCTGTGCCTTCTACCTCTCATTATACCAAGAATCCAAATGACAGCATCAAAAACCATTCTGCTAACAGTTCTCTGGTTTTCTGCACAGGTTAAGGAGTTTGTAGCCCATGGAGCCAATGTCCACTGTCTGGCCATGGGTCACAAGTCTGGCCGTGTCATGGTGACAGGGGGAGAAGACAGGAAGGTTAATCTGTGGGCAGCTGGAAAACCACACTGTATTATGAGTCTGACGGGACACACAATGACAGTGGAAGCAGTGAGGTTTGGACATGCTGAAGACATGGTGGTTGCTGGCTCAATGTCTGGTGCCCTCAAAGTGTGGGATTTAGAACAGGCTAAAATATTGAGAACACTAACAGGACACAAAGCTGGAGTTACAGCCCTTGATTTCCATCCCTATGGTGATTATTCAGCTTCAGGATCGATGGACTCTAATGTTAAATTGTGGGACATAAGAAGAAAAGGTTGTATATTCACATATAAGGGACACAATGATGGAATAAACTGTTTACGATTTAGTCCTGATGGGAAATGGATAGCATCTGCTGGAGCTGATTCAGTCATAAAGATATGGGACCTGACAGCAGGTAAACTGATAACAGATCTCAAAGGACACAAAGGTCCAGTGAATGTTGTTGAATTTCATCCTAATGAATTGTTACTGGCTTCAGGTAGTGCCGACAGAACTGTGAGGTTTTGGGACTTAGAAACATTCCAAGTTGTTAGTTCCACCGAAGGTGATTCAACTCCGATCAGGACTATAAAGTTTCACCCAGAAGGAATGTGTTTGTACAGTGGAAGTCGTGACATGCTCAAAGTTTACACCTGGGAACCAATTCAGTGTCTTGATTCCGTCCCAGTTCACTGGGGAGAGGTGGCCGACATGGCCATTGCAGAAAACCAGTTGATTGGTGCATCTTTTCTACACAGTAGTGTTTCCAGTTATGTGATAGCTTTAGAGCGTGTACAGCCAGTTGGTGGGGTGCCTCAACAGGAACCCGTTCGTCATTTATCAAGTAGTAGAAAAAATTTTGCCATGGAAAGACCTCCAACATCATCATCAAGACAAGCTAGTGTTCCAAAGGAAGATGAGAATGAACCAGGTAGAAACCAGGTAGAAGAACCAGGTAACAACGTGTCAGCAGACATACAGAACCAGGACGATTACCGAGAACTTTTTCAGGTCAACAGTCGACGACCTGTTGACAAAATCTGGCAGTATGGGAAAAAATCAAATAAGGCTGTGTTTCCTCCAAAGAAGGTGGAACCTTTTCGCCCGCCTCCTGAAGACTCCTCCCTCGAAGTGGAGCCAGTGAAACAGAAAGCCCCAGTGAAGTCTGCAGACAGACGAACAAACACAGCCGCAGATCAGAAAATCCCGCAAAAGAGGTTTGGAAATGTCGACAACAGTGGTAACTTGTCAGAGTCGGAGGTGCTGGGGTCACTCCAGAGAGGTCACACCGCAATGGAGCAGGTCCTGTCGAACAGGGGGCGCAACCTGCAGATTGTCCGAGCAATGTGGACAGCAGGAAACACCAAGACTGCAGTAGATTCTGCCATCAGCATGAATGACCCAGCTGTTATGCTGAAAGATCTACTCGGCAGCAAATATGAATGTTACGTTGTCACAACTTGTGCCTCACTGAAACTGATACTGAAAAATATGGGACCTGTGATTAAGGCTAACCTAACTGCACCACCGAGTATAGGAGTCGATATATCAAGAGAGGAACGATACAAGAAATGTAACACATGTTACACTACATTGATGGCAATACGATCTATTCTAGACAAACAGCAGAACATTCAGGGCAAACTGGGGGGCACATACAAAGAGCTGCAGATTCTGATGGGAAATTTAGTTTAA

Transcript

CsqKR_Scaf61_54.32

TGGATGTGGTTCATGTTAGCTATAATTTATTCTAAAAAATCTCCAAAATATGTGAACTTTTGAAATCTAAATAAAATATTTTTGTATTGCAGACAAAAATATGTACAAGTTTTATTTAGTAGCTGCCATTATGAGACTTGGTCTCATTGCTTATGGACACTGGCAAGATGTGACAATGGCTGTGAAATTCACAGATGTTGACTATTATGTCTTTACTGATGCAGCTAAATTTGTGGCTGAGGGAAAATCACCATATGACAGATCAACCTATCGCTATACTCCACTTCTTGCATATCTTCTTCTTCCAAATATTTGGTCTCCTGTGTTTGGTAAACTTCTTTTTGTATTTTTCGACATCATCACAGGAATTCTTATCAACAGAATCTCATTTTCGAATGGAAGCTCACCAAAAATGGCTGCCATCTGTTCCTGTTTATGGTTGATGAATCCCTTGACAATGACAGTATCTTGTCGAGGAAATGCAGAATCCATTCTGACATTTTTGATCTACAGGAGTTATCTTCCCTACATCAGCAGCAATTTTATTTGGTATGGATGGAAGTTCCTTTATGAAACGTATATTTATCACATAGTCCGTCAAGACTTGAGACATAATTTCTCTCCATATTTCTACATGATGTATTTGTCTGGAGAATCACAAACATCTCTGTTTGTCAGAGTCCTGGCATTTATTCCCCAGATCTTGTTCCATGTCACAATATCAGCCAAGTTTTATAAAGACCCACCATTCTGTTGGTTCCTCAACACTTTTGCTTTTGTTGCAGCAAATAAAGTTTGTACTTCTCAGTTTTATTTATTCCAGTATTTTCTTTGGTATCTGTGCCTTCTACCTCTCATTATACCAAGAATCCAAATGACAGCATCAAAAACCATTCTGCTAACAGTTCTCTGGTTTTCTGCACAGGTTAAGGAGTTTGTAGCCCATGGAGCCAATGTCCACTGTCTGGCCATGGGTCACAAGTCTGGCCGTGTCATGGTGACAGGGGGAGAAGACAGGAAGGTTAATCTGTGGGCAGCTGGAAAACCACACTGTATTATGAGTCTGACGGGACACACAATGACAGTGGAAGCAGTGAGGTTTGGACATGCTGAAGACATGGTGGTTGCTGGCTCAATGTCTGGTGCCCTCAAAGTGTGGGATTTAGAACAGGCTAAAATATTGAGAACACTAACAGGACACAAAGCTGGAGTTACAGCCCTTGATTTCCATCCCTATGGTGATTATTCAGCTTCAGGATCGATGGACTCTAATGTTAAATTGTGGGACATAAGAAGAAAAGGTTGTATATTCACATATAAGGGACACAATGATGGAATAAACTGTTTACGATTTAGTCCTGATGGGAAATGGATAGCATCTGCTGGAGCTGATTCAGTCATAAAGATATGGGACCTGACAGCAGGTAAACTGATAACAGATCTCAAAGGACACAAAGGTCCAGTGAATGTTGTTGAATTTCATCCTAATGAATTGTTACTGGCTTCAGGTAGTGCCGACAGAACTGTGAGGTTTTGGGACTTAGAAACATTCCAAGTTGTTAGTTCCACCGAAGGTGATTCAACTCCGATCAGGACTATAAAGTTTCACCCAGAAGGAATGTGTTTGTACAGTGGAAGTCGTGACATGCTCAAAGTTTACACCTGGGAACCAATTCAGTGTCTTGATTCCGTCCCAGTTCACTGGGGAGAGGTGGCCGACATGGCCATTGCAGAAAACCAGTTGATTGGTGCATCTTTTCTACACAGTAGTGTTTCCAGTTATGTGATAGCTTTAGAGCGTGTACAGCCAGTTGGTGGGGTGCCTCAACAGGAACCCGTTCGTCATTTATCAAGTAGTAGAAAAAATTTTGCCATGGAAAGACCTCCAACATCATCATCAAGACAAGCTAGTGTTCCAAAGGAAGATGAGAATGAACCAGGTAGAAACCAGGTAGAAGAACCAGGTAACAACGTGTCAGCAGACATACAGAACCAGGACGATTACCGAGAACTTTTTCAGGTCAACAGTCGACGACCTGTTGACAAAATCTGGCAGTATGGGAAAAAATCAAATAAGGCTGTGTTTCCTCCAAAGAAGGTGGAACCTTTTCGCCCGCCTCCTGAAGACTCCTCCCTCGAAGTGGAGCCAGTGAAACAGAAAGCCCCAGTGAAGTCTGCAGACAGACGAACAAACACAGCCGCAGATCAGAAAATCCCGCAAAAGAGGTTTGGAAATGTCGACAACAGTGGTAACTTGTCAGAGTCGGAGGTGCTGGGGTCACTCCAGAGAGGTCACACCGCAATGGAGCAGGTCCTGTCGAACAGGGGGCGCAACCTGCAGATTGTCCGAGCAATGTGGACAGCAGGAAACACCAAGACTGCAGTAGATTCTGCCATCAGCATGAATGACCCAGCTGTTATGCTGAAAGATCTACTCGGCAGCAAATATGAATGTTACGTTGTCACAACTTGTGCCTCACTGAAACTGATACTGAAAAATATGGGACCTGTGATTAAGGCTAACCTAACTGCACCACCGAGTATAGGAGTCGATATATCAAGAGAGGAACGATACAAGAAATGTAACACATGTTACACTACATTGATGGCAATACGATCTATTCTAGACAAACAGCAGAACATTCAGGGCAAACTGGGGGGCACATACAAAGAGCTGCAGATTCTGATGGGAAATTTAGTTTAACAGACAGCAATGCAACACAACAGTTCCTTTCACCTGCTGTTTTCAGTTTTTTAAAACAAATTTAAGCATTCGAACAACTGTGGCAGACTTTTATTTTCATGGATTACTGAGAAAATTTCTGTGGATTATACCAAAAGAGGATAATGGATTTTTTTTTTTTTTCTAAAAATTGTGATTTTTTTTTTTTTTTTAAAAAAGAAAAAAAAAAGAAAAATGGCCTCATATTTCAGATTTCTGAGTTTTGGATTTTTTTTTTTTTTTTTTTTTTAAAGTTACCTCCCTTACTTCATGGCAATCTTGTTAGAAGACTTGGATGTGTTAGTAATACTGCTTTGAAGATGTGACTTTCCAGCTACATGCATCACATTACAGTGACACATGTAGTGACAGTGTCTCAGAAAGCTTTTTAGTGATAACTTACGTCAATTCCTATGCACCAGTATCTGATATCATTCCATCCATGAAAACAAATATATATATATATTTTTTTTTTTTTTTTTTTTACTATCTTCATTGCTTTGAGAGAGAATTACTCTTACACACTGAAAATAAATGACTCACGAAGTGGATTTTTAATATTTTTACAGTGAATTATTATGTTCTTTAGTTTCACAGAATACATTTGTTATCAATACCTTGTGAAAACTATTGTTATACTGTCCATCCTAACTTTTTGAGAATGGAAACATCTGCTCAATATCATGAACAGTTTAAAAAAAAAATAATAATAAAATGGAACAATTTAATAATCTGGAAATCACATGCTCATTTACACTTAATAAACTTAAGTATGTGTTGTGATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTGTTACTACTACTATTATTACTACTATTATTATTATTAC

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF05007	Mannosyl_trans	Mannosyltransferase (PIG-M)	Family	Interproscan
PF13925	Katanin_con80	con80 domain of Katanin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR007704	Family	GPI mannosyltransferase 1	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR026962	Family	Katanin p80 WD40 repeat-containing subunit B1	Interproscan
IPR028021	Domain	Katanin p80 subunit, C-terminal	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19845	KATANIN P80 SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004376	Molecular Function	glycolipid mannosyltransferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006506	Biological Process	GPI anchor biosynthetic process	Interproscan
GO:0007019	Biological Process	microtubule depolymerization	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0008352	Cellular Component	katanin complex	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0051013	Biological Process	microtubule severing	Interproscan
GO:0051751	Molecular Function	alpha-1,4-mannosyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf61_54.32 global RNA-seq network