Gene detail

Detailed information of CsqKR_Scaf61_1.17 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf61_1.17	DUAL SPECIFICITY PROTEIN PHOSPHATASE DDB_G0269404-RELATED	chr3	7458953	7463948	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf61_1.17

ATGATTATTGAGGGTCTGTATGTGGGTAATTTTCGAGATGCCAAAGATGAAGAAGAGTTGAAGAAAAATAGAATCACTCACATTTTGTCCATCCACGACAATGCTAAACAGCTCCTAAAGGACAAGACATACCTGTGTATCATAGCTAGTGACAGTCCGGATCAAGACTTGACTCAGCACTTTCCGCAGTGTGTTGACTTCATACACAGCGCTCGACTCAACAATGGCCGAGTTCTTGTTCACTGTTTGGCTGGAGTGTCTCGGAGTGTCACTATAGCAGCAGCCTACATAATGACTGTCACTGAGTTCGGCTGGCGCGACTCTCTGCACGCTATACGAGGAGCTAGAAACTGTGCAAACCCAAACTTTGGCTTCCAGAGACAGCTAATGCGTTATGAAAGTGAAAAACTCGCTGAGGAGAGGAAGCGACTGAAGGAGGAGTTTGCGTCAGTGGTGAATGACGATGATGCTGAGGTGAGGCAGCTGCTGGTGGCCTACAACAAGTTTGTACTGCATGGACCTTCCTGCGACGACTACCCCCTGCCCCTCGACGCCTACAGCAACCGCAAGAAGTCCAACAGATGTGACAATGATGATGAAGAGGAAGTTAATGGGAACACAGTTGCTGTCAGTGATGATGTTGATAAACAGAACATGAAAGGAGATATAGCTACAACTAGTGATGATGATGATGATGATGATAAGCAGGTTAATGGAGATGGAGCTACTGCTGGTGATGTTGATGTTGAAGACAGATGTAGTACACATCAGACCGATGTAAACAGTGGTGATGATGTAGAGTATGTGAGAGAAACAAACAGGTGAAAGTGTGTAACGCTGAGTTTTAGTTTTATTTGTTCCTCACCATCCACCTCCCTGTCACTAAATCACTTTTCTGTTTCTTTTCACGTTCACTGTCATGTTTTTGTTTGTCAACCGAATGTCATATTCTGTATGAAATTTTTATTAAATAAATTTTTCTTGCATACTGAAAATATATTCAATTTAGTTATGAAATACTAATAGACAAACATTCTTTAATTTTATATTTTTATATTTTTCTTTTTATAAAACAGAAGTATTAGTTTTGATAGGTCACAAATATGATTTGTAATTAAAAACCTTCATTCTAATAAGTGTTAAAATGTTCAGGATAAAATGTCATTTGTAGTATTTTAGTATTTATTTGCCTGATAGACCTTGATTAGATATACACTGTGTAATTGAATGGTTAGATGTTAAAGTTTTTAGTAACAGTATCATACAGTTCACTTCTCTCTGTCTGTCTGTAAAGTGTATGAACATGGTCAGTATTTTTACAAAAAGGACATGCTTCAACGATAACTTTGTTAATGAATTTTTTTTAATTATCCGTGTACTCAAATTGCTTTACTTGTGTGATAATTATAGCAGATTTAATCAAATAAAAATAAGGCTAACTATTTAAAATTAATAATCAGTTTCAGAGATAATGAATAGTTTTTAAAACATAAAAGTGTCTTTAAATAATTTTAAATTGTAAAATCTTTTGTCATAATGTTTGTATGACAAAAGATCTTGAATACATATTTACACTGGAAAAAAAGCAGACATGTTGCTTTCATTCAGTAATGGGTTAAATTGTCTTGCCAATTTTTGAGGTTCATTTATTTTTGTTTTGTGTAAAAATAACACAGATGTGTTGTTAAATTGTTTAGTGCATGATTTTCTCTTTTCATTGAATTCTGAATACTCAATCTGATTTTCCATTTCTTGTCAACTTACAATGAAAATAGGATGAATACTTTTATACCTTTGTAGAATTCATTAATTTCCTGCCTAGATTTGTAAATAAGTTTACATTAAGTATCTTCTTTTTTTTCTTCTGTTTTTAAAAATAATTTAATCAAATTTTGTCAAATTCCACCACTGCCAATATTTTGATATTATGAATGATTTTTACAATTTATTTTTTGGTGATCATAATTGTAAACGGTGTTACATATGCAAGTGCCTCAGTATTAAGAAAACAGATGCAGCAGTTTCAGTGTTTGTTTATGTCCTGTGTTTTATGCAAAATGGCAGCACTGGAGTAGGTTTGTTTCAGTACTTTCTGAAGTGAAATATGAACTAATTTGAAGTTTACCACGTTGTATTGTGTTCATTTTTTGTCAATAAACATCAGCATCAGCCATTTACACCTTTTACATAAATGCTGAAGTATGTGTCAGTTTTATTGACCTAATCATTCTTAAAAATGGCTAATATTTGTAGTGTTTGAAAATGTCTGGTACTAACTATCCAAGAGGTATTTAGCTGACTTAAATTTATGTAACAAAATATGCATAGTGCCTAATATATACACATTTATACATTTTTTTTTTTTTTACACCTGTCAGCAGTTTCAGTTTTGATTTCATGCAGTGTGGAAAGTTGCCTGTGATAGAGAAATACACATGTACTGATGTAAGTGAAATTCATTTTGTTTCACTCATTTTAAAATGGTGGTGATTAGAACTAAAAAACATTGTGCTTTGTGAATAATTTACTCAGTTCAGTAAATGACAACTTACATTAAACAAGATACATCATATATTGTTTAAAAAGAAAAGTTTCTAAATTTCATGTTGAATTTCTGTCATAACTGTCAGTTTTATACATACATACATATATATATATATATATATTTTTTTTTACAAAATACAAATGTCATTGATGTAAAAGCAGCATGATCAGACACAGAACATAAATTTTGAGAAAGTTGAAGATTTCATCAGATAAATAAAGAATTGTTCTAAGTGTTGTTGTTTGACGCTGGTAAACATTTGTGATTACTTTTTGGATTCTCATCCCATCATTGACAGAACACTTTGAGTAGCGTTGTACAGTAGAATATTAATACAACTTGAAATGTTGTCTTGCCATGAGTGCGGAGCACCTCCGACCCACAAACAAAATGATTGGGGTAATGAATATTGATTATTATTTTTTAGTAAAGTCTTTGTTTTATTCCATCTGATTTTAATAAATGAATGACCTTTGTCTTTTGAACTTATATAGACTGTATGCAGTGTATTATTATCTAAACTTGTTTTGTGGTTTTTGCCTATTAATAAATTTGAAAGTTTTGTACATTTTTAAAAACTATTTTTAGACTGTGATATGATTTGCTTGAAGCAATAAATGTTTACTATCAACGTTTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00782	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000340	Domain	Dual specificity phosphatase, catalytic domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR020422	Domain	Dual specificity protein phosphatase domain	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45948	DUAL SPECIFICITY PROTEIN PHOSPHATASE DDB_G0269404-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf61_1.17 global RNA-seq network