| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| CsqKR_Scaf60_1.32 | CCR4-NOT TRANSCRIPTION COMPLEX RELATED | chr9 | 143794 | 147672 | + |
| CDS | |||||
| CsqKR_Scaf60_1.32 | |||||
| Transcript |
| CsqKR_Scaf60_1.32 |
| Protein |
| CsqKR_Scaf60_1.32 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14570 | zf-RING_4 | RING/Ubox like zinc-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001841 | Domain | Zinc finger, RING-type | Interproscan |
| IPR012677 | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR035979 | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR039515 | Domain | NOT4, modified RING finger, HC subclass (C4C4-type) | Interproscan |
| IPR039780 | Family | CCR4-NOT transcription complex subunit 4 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12603 | CCR4-NOT TRANSCRIPTION COMPLEX RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity | Interproscan |
| GO:0016567 | Biological Process | protein ubiquitination | Interproscan |
| GO:0030014 | Cellular Component | CCR4-NOT complex | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
| 1. Expression trend for CsqKR_Scaf60_1.32 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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