Gene detail

Detailed information of CsqKR_Scaf5_41.11 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf5_41.11	EUKARYOTIC TRANSLATION INITIATION FACTOR	chr1	44233765	44241039	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf5_41.11

GTTTAATTCAATGAGTCCAACCTACGCATTTCTAAATATAATGGTCGCTAATGGTAATAGTAATTTGTGACGTCAAACAGCATTTGTCAAATGGAGTATAGTTTTCCATAGTTTTATCGTCTCGTTGGTCCGTGATTGTCATCCGGGCACTTTCTTGTCATTCTTTTGCCAGAGATATTCTGGTGTATGTTTCAGTTTTCCCAAGTGACATTTCCCGCTAACATATTGGGTCCTAGCGCCCTTTGGCTGTCGCCTTGCACATTCTGCCGACCAGTATCAGTTGCTTTGCTCATTTTCAGCGTTTTTATGACGTATTTGAATCCAGACGGGCCCTTGTGGTGGGAAGAGAGAATTATTGAACCCAAACAGAACTGTAGGGGTATAGGTGCTCAACCAAGGTTTATGAAGTTCCCTAAGCACAGCAATCACTTCAATAAAACAGACGGAGGTATTCATCGGAAAAGAAAGCCGTATCTGACTGTCCATTCAAAATGGCTCTCAACATCGACAGAACAGTGGCTGACCAGTTTTACCGCTACAAGATGCCTCGGCTCTTAGCCAAAGTTGAGGGTAAGGGAAATGGGATCAAAACAGTGATTGTTAATATGACAGATGTTGCCAAAGCACTGTCCAGACCGCCTTCATATCCCACCAAATATTTTGGCTGCGAACTCGGAGCTCAAACTCTTTTTGATGCCAAAAATGATCGCTACATTGTCAATGGCTCACATGATTCTGAGAAACTTCAGGGATTGCTTGATGGCTTTATCAAACGATTTGTCTTGTGTCCCGAATGTTCAAATCCAGAAACTAATCTTTCAGTGCAGCAGAGAAAACAAATGATTTCCCAGCGCTGTATTGCTTGCGGCTATCAGGGCTATGTGGACATGAAGCATAAACTAACAACATATATTCTGAAAAATCCCCCAGATATGGATGTATCTACAACCCCTAGTAAAGGTAAGAAGGACAAGAAGAAGGATCGTAAACAGAAAGGCTCTGTAAATGGTGAAGATGCAGACAAAGATCGTGCCAGTCCAGAAGCAAACGCTCAGCAGCAGATGGCAGCTCAGCGGGCTTCTGGAGGAATTATCGAAGCTCCGCCAGAGATGAAGGAGAATGATGATGAAGACTGGGGTGAGGATCTCAGTGAGGAAGCAGTTAAAAAACGTCTGGAGGAGCTCACCACTGCTGCTAAGGGTTTAGCATTTACTGAAGACCTGGAGAAAAGTTCTGAAGAAAGAGTCAACATGCTGTATCAATATATTAAACAAAAACGCGAACTTGGTGATCTTAAAGGATTAGATATTTTTCAAGAAGCTGAGAGACTTGAGGTCATTGATAAAGTTACAATGGTTTTGGTGGAACTTCTGTTTGATAAGAACATTTTACAACAGATTAAAGATCATGAAAAACTATTTCGGAGGTTTTGTATTAACAATCAGAAAGCTCAGAAATACCTGCTGGGAGGTATTGAGCAGCTCGTCGGAAATGTCCACAAGGAAGCCCTGCTGCCCAAAGTCCCGCACATTCTGAAGGCTTTGTATGATGCTGATATCCTTGAGGAGGAGGTTCTTCTGGAGTGGTCGAAGAAGGCTTCTAAGAAGTACGTGTCAAAATCAGTTGCTCAGGAGATTCAGGATAAAGCAGCACCATTCATCAACTGGCTTAAAGAAGCAGAGGAGGAAAGCGAGGATGATGAGGATGAGACTGTTCAGGTTGTCTACTCTAACACTGAGAAAGTTGGTCAGCTGACCACCACACCTGTTGCTAAACCTGTAGAAAAAGAGGATGACGACTTTGATATTGATGCCATTTAAAAATAGCTCTCGATTACCAGCACAAAATTCACAAAATGCTTTAGTGTTGATGTGTTAATTATAAAACAAAACAAAAAAAAAAGAAAAGAAAGAAAAATAATATAAACAAAATTTGATGTTTACTTTTATTTGATTCATGATGGAATTTGCTAAAGAATTGTTTTGTGGGTTTTTTGTGAAAAACTACACACAACATTTTGTGTTTTGGGGCACAGATTTTAAATGATATAAAACAATGTTGCATTAAAACTTTTTTTTTTTTTTTTTTTTTTTTCTATAGTTTATTTGGCATCATTTGATGTTGAGTTCATTGTGTACACGGATGTTACTTTTGTCATTTCTCTAGTTTTACGTTGTTAAAACTAATTTATCAATAGTTAAACAGATTCTTTTTATCTTTCTAATAATTTCATTTACCATCTGTCATATTAAAAAAAATATATATAATTTCAATAATTTCATCTGTTTTGGCATCTTCTAACATTTTATTTAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01873	eIF-5_eIF-2B	Domain found in IF2B/IF5	Family	Interproscan
PF02020	W2	eIF4-gamma/eIF5/eIF2-epsilon	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002735	Domain	Translation initiation factor IF2/IF5 domain	Interproscan
IPR003307	Domain	W2 domain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR016189	Homologous_superfamily	Translation initiation factor IF2/IF5, N-terminal	Interproscan
IPR016190	Homologous_superfamily	Translation initiation factor IF2/IF5, zinc-binding	Interproscan
IPR045196	Family	Translation initiation factor IF2/IF5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23001	EUKARYOTIC TRANSLATION INITIATION FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001731	Biological Process	formation of translation preinitiation complex	Interproscan
GO:0001732	Biological Process	formation of cytoplasmic translation initiation complex	Interproscan
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0005092	Molecular Function	GDP-dissociation inhibitor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan
GO:0071074	Molecular Function	eukaryotic initiation factor eIF2 binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf5_41.11 global RNA-seq network