Gene detail

Detailed information of CsqKR_Scaf59_40.37 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf59_40.37	FANCONI-ASSOCIATED NUCLEASE 1	chr5	10036051	10050018	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf59_40.37

ATGAATTTAAAAACATCGTTAAAAAGAAAATTATCTCAGCCGTCATCAAAATCGAAAAATGAAAAACCGGGTTCAACCATTTTATCGTTTTTCAAGTCACCTGCAAAGAAAAGACCTACCTCGTCAGTAAATCTATTAAATGATGTCAAAGAAATTGACGATGATTTAGAAATAATTTTAGTAGAAAAGAAGTCGAGATATTTTGGACAAACATCCAAAAAGATAGGTAAAGCCTCTCAGTCGGAGGACTGTGAGGATGAAAAACCGCATCAAGGAAGTGCAGAAGACAAAATACCAAAACTGAGAAGACTGAGCTTGAGAAAAAGATCAAGCCAAAAGATTGAATATTTTCAGAATGCACTGGGAGAAAATGAAGAAAAAGTTTCTAGGAAACAACTAAGAGAACCAATACAGTATAATGAAAAAGCAACTGAAATAGATAATAATAATGTTCTGACAAGAAGTCAAAAAAATAAACATCTTATTCCTGAGCCCAGCTCAGTCACAACAGGTTCAAAAAGGAGATATTCTTTAAGAAAAGGAAAATTAAAGAATGGATTAACTGTTAATACTGAGAATGTTACTTCACAAGATACTGATAAATCTGCTAGTTCAGCTGAAAGCAAATGCAAAAAGAGAAAGTGCAAGAAAGACACATCTGAAGACGAAGAAGGTAACCAAACTGACACATGTAATAAATCTAAAGAAGACAAGAAAGAATTCATTAGTAGTTCCAACAACCATGGGGATGGGTTGGAAATTTTCAGAAATGTACAAGGTCATATCATCGATGAAGTGTTGATTTCAGAATTTAATAAAGATTTTGATATTCCAGAGAAAGAGGTAGTCTGTGAGTCAAAAGAAAGAAACAACTTACCTTCCACATACACTGCCAGTCCCTGTCAGAGTTATGACTCTGAACACAAAGCACTGTCTCCTAGCAACCAAAAATATTCTGAAGAATCTCATACAGATGTTGTACACACTAACACACCTAACTCAGTACAGACCATAGATGAAAAGAAGAATAGAAACATAAAAGTGGAAAATGAAATAAAATATAAAATTCCATATTATCTGGAAAACTTTCAGACTATTTTGTCAGCTGTGTTAGATAATGAAGATAATAAATATCTTTTTAATACAAATGATTTGGAAGTCATCTCATTATTTAACAGTCTTTCAGATTTGGCAAAGAAATTGTATGTGCGATTATTCTCAAGAAAACTTTCATGGATGTCTCTCTCTAAACTGAAATATCCAGAAATTGCAGAGGACCTGACTGAAGTTCTTCAGGAAATTATCAGTGCAGATTTGGCAGTATCAGATATTGAGCTTACAGATCTTCCAACAGCTCTGAATTGTCTTCCTCTGCCAGAACTGAAGACATTGTCCAAAACCTACCATCTCAACATCACTGGTTCCTCAAAGACACAAATAGCAGAAATGTTACTGAAGAAAAGCAAGCAGAATACAATTGGCACAATGTTCGGGGCAAAGTCTAAGTCACTTGATCCTCAGTCTGTCATGTTAACTAGGGCAAAGAAACATCTTGGACTGATGTTTAGACTACAAGAAGAGAGAAGACGAGTTTTTGTCCGAGTTCTGATGCTGTTCTCAGTTCTTAACTCTTCAGTGGATGATGACGCTGCTAATGGAGGACAGTCACAATTATATCAGATGCTGCTGGTAAACATGGGCAAGGTCATTTACCCAAAGTTCAAGGTCAACAAGCAGACACAACTGTTTTTGGACAGAGATAGTTTTCTAAGATTTGAAACTGCTATGCAGTTGGAGAATGATATGTCAGTGTGTGTTGAAAAGGGTAACTGGGCAGGTGCATTTGAAGTGTACAAAACAGCAAAACAGGAATACGACAAACTTAAAAAACAAAGCAAACTTGTCAAATGGGATTCCAGTCTTCCATCATTCCTGCGACTTTGTTCAGCAGGTTCAGTTTTGGTTCGAGTACTAAGTCAGGGAATAGAGATTCTACAGAGACAGAAAGACTACAACGGCGCAGTGACACTAATACGTAAACTGCTGAATCAAGACATCTACTGCAGTGACTACAGAGGTTACTGGTGGGAAAGGTTAGCTCTTAATCTGGAGGTTCATCTTAAAAAACCTCAACAGGCTTTGGAAGTTATAAAAAAGGGCTTAATAGATGCCCATGTACTTGTTGGTCATCGTCTTGCCTTGTACCAAAGAGCTGACAAAATCTGCAATACTGCTAGTCTGAATCTTCAACACTGCCTGAAAGATTTTTATCATGAAGATATTGTAGAACTACCAAAGTTCATGACGGCTAACTCGTATCTGGCTGGTGACTCAGATGACATCACTTGTTGTGGTGTGGAACAGCTTGTTCTAGAACATTACAAGAAAAATGGCTTCCCTGAAGGTTGTGCCTTCCAAACTCAGCCATTAGATTTCCACACAGAACATTTCTACATTAGAAGAAAAGAAGCAGTCGAACTGAAACTCAAAGAGATTGAAAATAGCAGTGAAGAGGGGCTGGTCTCTTGTATTAGGGGTGAGGTCCTGGCCCAGATTCTCAGACGATTTGTTACGAATCCTCGACACACCCGAAGTGGATTTCCCGATCTTACCTTGTGGAATACAGAAAACAAAGTCTTCAAGATTTGTGAGGTGAAAGGACCAGGAGACCGACTTTCTCACAAGCAGATTCTCTGGATTGACTTTCTCGTTAAACTTGGGGTTGATGCCGAAGTTTGTCATGTAAAAGAATATCGGGTACAGGCGCATGCGTTTGAAGGAAGCGGAAATGTTCATGGCAAATCGGTGAAAATGGCTGATTTTCTGAAAGGTCTTCCATCTTACAACGAGAAAAATTTTGCTCGTTTTCACAGCGATTCGAGCTGCAAGACCAGTGTGAGAAGGCCAACAGTATATATTTCAACCAAAGAACATCCATCAGAACAAGTGATCACTACAGAAAAGACCAATATTCTGCTGCGTTATTTGCATCAACAGTGGGACAGAAAGAATTCCAGTAAAAAGCGTGATTCGAGTAGAGCAAGTCTGGAAGATGGAAGTTCGCCAAGTTCGTGCAAGATACCAAGACTGAGCTCAACTGATGATGCATCATAG

Transcript

CsqKR_Scaf59_40.37

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08774	VRR_NUC	VRR-NUC domain	Domain	Interproscan
PF10172	DDA1	Det1 complexing ubiquitin ligase	Family	Interproscan
PF21169	Fan1_SAP	Fanconi-associated nuclease 1, SAP subdomain	Domain	Interproscan
PF21170	FAN1_TPR	Fanconi-associated nuclease 1, TPR domain	Domain	Interproscan
PF21315	FAN1_HTH	FAN1, HTH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011856	Homologous_superfamily	tRNA endonuclease-like domain superfamily	Interproscan
IPR014883	Domain	VRR-NUC domain	Interproscan
IPR018276	Domain	DET1- and DDB1-associated protein 1 domain	Interproscan
IPR033315	Family	Fanconi-associated nuclease 1-like	Interproscan
IPR049125	Domain	Fanconi-associated nuclease 1-like, winged-helix domain	Interproscan
IPR049126	Domain	Fanconi-associated nuclease 1-like, TPR domain	Interproscan
IPR049132	Family	Fanconi-associated nuclease 1-like, eukaryotes	Interproscan
IPR049138	Domain	Fanconi-associated nuclease 1, SAP subdomain, metazoa	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15749	FANCONI-ASSOCIATED NUCLEASE 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004518	Molecular Function	nuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008409	Molecular Function	5'-3' exonuclease activity	Interproscan
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds	Interproscan
GO:0017108	Molecular Function	5'-flap endonuclease activity	Interproscan
GO:0036297	Biological Process	interstrand cross-link repair	Interproscan
GO:0070336	Molecular Function	flap-structured DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf59_40.37 global RNA-seq network