Gene detail

Detailed information of CsqKR_Scaf59_3.10 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf59_3.10	LON PROTEASE	chr5	6337460	6350669	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf59_3.10

GATTAGGTACCGCACGTGCTGGTAATCCGGCTATTTCCTGCATAAAAATGATGCACTTGGTTACAAAACCATCATCCAGAAGTCTTGTTATTTCCTTAAGTGCTCCGAACAAGATGACGTGTCACTGTGGACGATTTTTGAGAGCAAACACGAAAAGCCGATTTCATCATACTCGATTCCTCAACTCTGCGAGTGGCTCGACCCCAGCAAAACGGTGTCACCAGAAATTTTTGCTTTCTGATCAAAACTCAGTATTGACTGGTGTTGCTGTCAGGCGTAGATCGCTGAACTGTAGTTACTGGAAACAGAGAAGTGTCACTCTGCTGAGTCGGTGGTTTTCCACTTCCAGTGGGAATAATGGTAGTGATGGGGAAAGCGGAGGATCCCAGAGTAACGAGAATTCATCTCCGCCCGAGGGTGGCGATCCTCCTTCACCGCCACAACCTGAAATGATATTCCCAGGTGTAGCTCTGACACCGCTAGCGATACCCGAAGTCTTTCCTAAAGTACCAGTCATAGCAATAAACAGAAACCCTGTGTTTCCCAGATTTGTTAAAATGATAGAGGTAACCAATCAACCATTGATGGATCTGCTGCGCAGGAAAGTTCGACTGAATCAACCGTACGCTGGCATTTTTCTCAAGAGAGATGAGAACAATGAGAATGAGGTTGTGTCAAGTCTGAAAGACATCTATGATGTTGGAACATTTGTTCAGATTTCTGAACTGCAGGATCTTGGAGACAAGCTGAGGATGATTGTTCAAGGACATAGAAGAATAAAAATTTCCAATCAGCTGTTTGAAGATTTAGAAGAAGCAGTTCCTTCCACTCCAGGACCAGCAGAAAATGCGACAAAGAAGAAGAGAGGTCGTCGCCGCAGAAACAAGACAGATGCAGAAACTGGCGAAGCTGACATTGCCGAAGCGGTTGAGGCACAGACAGAAATACCCAGCAGCGTGGTTGAAGAAATGTTGCGACCACCCACACAGATGCCACCAGATCAACCAGTGTTAATGGTTGAGGTGAACAACTTGCCACATGAACCATTTACAAGCAGTGACGAGATTAAGGCTCTGACATCAGAAGTAGTGAAGACAATACGAGACATTATTTCTATGAATCCACTCTACAGAGAAAACCTTGCACAGATAATTCAGGCTGGACAAAGAGTAATTGACAATCCTGTTTACATCAGTGATCTGGGGGCTGCATTAACAGCAGGTGAAGCTGAGGAGCTGCAGAAAGTTTTGGAGGAAACTAATGTTGCCAAACGATTAATGTTGACTCTGTCATTACTGAAAAAAGAATATGAACTGAGCAAACTGCAGCAGAGAATTGGAAAAGAGGTTGAGGAGAAGGTGAAGAAACAGCACAGAGAGTACATCCTGCGGGAACAGCTGAAAATTATCAAGAAAGAGCTCGGACTTGAGAAGGACGACAAGGAGGCCATTGAAGAGAAGTTTAAATACAGACTGAAGGACTTGGTTGTTCCAGAACATGTAGAGATAGATGAAAACAAGCTGGTCTCCTTGACAACCATTCCTCAGGTTTCAGTGTGACAAGAAACTACTTGGACTGGTTGACAAGTCTGCCCTGGGGTAAGTTCAGCAAGGAGAACATGGACCTGGACAAAGCCAACCAAGTGTTAGAAGAAGACCACTATGGAATGGATGATGTCAAAAAAAGAATTCTGGAGTTTATTGCAGTCAGTATACTGAAGGGATCAGTACAAGGGAAAATTCTCTGTTTTTATGGACCACCAGGTGTGGGCAAAACCAGCATTGCAAAGTCCATTGCAAGAGCTCTAGGAAGGGAGTATTTTCGCTTCAGTGTTGGAGGAATGACAGATGTGGCAGAGATCAAGGGTCACAGGAGAACATATGTGGGTGCAATGCCAGGAAAAATCATTCAATGTTTGAAGAAAACAAAAACTGAAAACCCACTTGTTCTTATTGACGAGGTAGATAAAATAGGTAAAGGTTACCAAGGAGACCCTGCTTCTGCTCTCTTAGAATTGCTTGACCCAGAACAAAATGCAAATTTTCTTGATCACTACCTTGATGTCACCGTTGATTTGTCAAAGGTTTTGTTTATTTGTACTGCAAACATCACAGACACGATTCCTGAGCCTCTCAGAGACAGAATGGAGATGATCGATGTGTCTGGTTACGTCCCTGAAGAAAAAATGGCCATTGCTAATCAATATCTTGTACCACAAGCCATCACACATTCCGGGGTGGACAATGAAAAAGTTTCAATACATGAAGAGTCAATGAAACTACTCATCAAAAGTTACTGTCGAGAGAGCGGAGTCCGAAACCTGCAGAAACACATAGAAAAAATTTACAGGAAAGCTGCAATGAAGATAGTGAAAGACAAAGCAGATCAGATTGTTGTTGATCTGGACAATCTACAGGACTATGTGGGTAAACCTATTTTCACCAGTGACAGAATGTACGACGAAGTGCCACCTGGTGTTGTTATGGGTCTGGCTTGGACATCTATGGGGGGAGCAACTCTGTACATTGAGACAGTTCTGAAGAAGCCGGTTGTATCGGATGCCACAGAGAATGGATCACTGGAGATCACAGGAAACCTGGGCCAGGTGATGAAGGAGAGTGTGAATCTCGCTTACACATATGCCAAGTTTTTCATGCTGGAGAAATACCCCGATAACAACTTCTTACAAAAAGCACACGTCCATTTACATGTACCTGAGGGAGCCACGCCCAAGGATGGACCCAGTGCTGGGGTGACGATCATCACCGCGATGTTGTCGCTGGCTCTACAGAGCCCCACTCGTCAAAACCTGGCCATGACAGGTGAAGTGTCACTCACTGGCAAAGGTCCTCCCAGTGGGTGGGATCAAGGAAAAAGTCATTGCTGCTAAACGCAGTGGGGTGGACTGTGTGATTTTGCCAGCTGAAAACAAAAAAGATTTTTCTGATTTGCCGGCTTTCATCACAGAGGGACTTGAAGCTCATTTCGTCAGTCATTACAAGGAAGTGTTCTTCATCGCATTCCCAGGGTTGTGAGCTCAAATCCACTGACTGAGATTACACTTCCAGTATTTCTCCTTGGTGCAAGTGTTGAGTACTTCAAGGTGTCGTCAGATCAGTTTTTAATTTTCATTTCATTCTCTGGGCTAAACTTGTATCTTTCTCTTCAGTGTATCTTTCTTTCTTATTTCTCTTTTCTTCTCTAGGAACCTCTCAGTGTCCAGTTTGGTTTAAATTAAAGTGTGACATACTTCATGTCTTTATTTTAGTATATATATTTTTTTTTAAATTTGGGAACATTTTAAAAAAAATTCTGCATTATAATTTTATTTAATTTTTTTTTTTAAAGAAAAATTTGAGCAATATCCTTCCATCAGACAGATAAAAAAAAATATATTAAAATAAATTTAAATAAAAAAAACAACAATTTTTTGTGTGTTTGAAAATCCATGCATAATGTTTTAAATTATAATTTATAATTGTTTTCTGTGTTGTAGTGTTATTGTTATGCTGTAAGATTTTGTCTGCACTGCCAGTCTTTTGTTTGCAAACACAACCAACCATGTTTGATGAAGAAAGATTTGTTTTGGTTTTAAATACACTGATAAAAAGTAGGGTATTATTATTTATTTATTCACAAAAGTGTGCTAGTCTTCACTGTTGCTTTTAAATGATCATGTGACACAAAACCGATTTCTGATTGGTACTTTGCAATTAGAATATCTAAAAAAAATTTTAAAAGAAATGGTGGCAGCATATTTTTGCTCACTCTCATCTTCATTATACAAAACCTTTACGATTGCTGTCTAATAAATATTAATAATTAAAAATGATTGAGATGTAAGACAAATTCATTGTTCCATTTAATATTTGTTTGCAATGAGAATCTTGGTGGTTTTTCGCGAGGCCTACTGGACGCACAAGATGGGTTTATTTGAATATTGTAAAGTATGTTGTGTGTGCTACTGCAATAGCTTTTGTTTAATTCTGTTAAATTCATGTTTTCAAATGTTCAGTTTAATTATCATTATTATTTATTTATCTTTAGTATATGAATTTGGATTTTTAAATTCTAATTTAATAATATCATTTTGAAGAATATTTCTTTTTATTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02190	LON_substr_bdg	ATP-dependent protease La (LON) substrate-binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003111	Domain	Lon protease, N-terminal domain	Interproscan
IPR015947	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR027065	Family	Lon protease	Interproscan
IPR046336	Homologous_superfamily	Lon protease, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43718	LON PROTEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0004176	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0004252	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005759	Cellular Component	mitochondrial matrix	Interproscan
GO:0006515	Biological Process	protein quality control for misfolded or incompletely synthesized proteins	Interproscan
GO:0007005	Biological Process	mitochondrion organization	Interproscan
GO:0030163	Biological Process	protein catabolic process	Interproscan
GO:0051131	Biological Process	chaperone-mediated protein complex assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf59_3.10 global RNA-seq network