Gene detail

Detailed information of CsqKR_Scaf55_5.19 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf55_5.19	POLYCOMB PROTEIN	chr1	18318958	18327073	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf55_5.19

ATGTGGAAGGCTGCAGCTGGAACAAATATAAACGTGAAGCCAATTTCAACTGAAGATGATGATTGGGAAACAGATCCTGATTTTGTAAATGACGTCAGTGAACAAGAACAAAGATGGGGTGCAAAGACTGTAGAAGGTTCCGGACATCAAGCTTCTTTAGATTTGAAGTCGCTGAGGAAGGAAGTAGAACAAGACGATAAAACAGTGAAACAAAAAGAATTTGAAGAGGGCCCAAAAGCTTCGTATGGCTATGGTGGCAAGTATGGAGTCCAAAAAGATAGAATGGATAAGTCTGCTGTGGGTCATGACTATCAAGAGGAGTTATCAAAACATGCCAGTCAGACTGATGCTGCCAAAGGTTTTGGAGGAAAATATGGAGTACAGTCAGACAGGAAAGATAAAGTTAATCACACATTGCGTATTTGGAATGTGAAAACGGATGTTTGTGTTATGATTCTGGGTGGGGTTGATGGTCACAGAGATGAAGTTCTTAGTGCTTCATGTGAGAACTGTATAGTTTGCTGGAAGCCAGGAACAATGGATCAGGATGAGAAATCGCCAACAGACACAACAGTTACAATACTACACAGATTTGACTACAGGGAGTGTGAGATCTGGTACATGAGGTTTTGTCTAGACTTTGCTCAGAAGATAATGGCTCTTGGAAACCAGGTTGGAAGAATTTTTGTTTGGGATTTAGATGTTGATGATCCTACACAGTCCAGGTTCACAAAGCTGTCTCATGTAAAATGTACAACTCCAATTAGACAGACAGCTCTTTCTAAAGATGGGAACATTCTGTTAGCAGTGTGTGATGACTCAACTATCTGGAGATGGGATAGAGTCAAATGAAAGAATCAACAGACAGAGGAACCATTTTGATTCCTTTACATATGTGAAGAAATAAGTTGAGCTGCTTACAGAAAGAAGTGTCTTTTTCTGAAGACAAAATGAAATGGACAAAGACAAGAGAAAATTATTAAGAACACAATTCTGAAAATTAAAGGAAAGAAAATTTCGGTTTTATACAATCTGGTATGGATCAACTGGAGTTGTTAATGAAGTTTTTTAAAAATGTATATATTTCTTCTTTGATTACAATTTAGTTTTTAAAGTGAATGTGTGAAAGACAAAATTGGCTGTTAAAAGTGAACATATGTATGTATGTATGCGTATATATATATATATATATATATATATGTTTATAAAACAATTGTTAAAAGCATTTAAGCCATAAGAGCTTGCAATATTTTTCATACAGGAATAATTACACTGGGTCTTGCCATTTTGTATTTAATTTTAATTTTTATTGTTTGAAAATAAAAATAAGAGCTATGATATAATATTCATTATTATTAATGCACAGAAAACAAACATCACACAATTCTTTCAATAAAGAAATTTAATGAAAAATGTGCTTGGGTGTGTCAGATCCAGCCCGATACCTGAAGGGTTAAATATCCATTATTTGTTCTGGGACCAGTTATTAAGTTTAGCATAAGTTGAAAATGAGCAGCATTTAACATTTCCAGCAGTATTATTTTGAATATATTTATTTAGAGCTTGAACAAAAAGTCTTAAAACTTGAATGTGTCTCACATGCTGCTACTTTATTAAATTTATTAAATTTCTGTTGTGTACTCTAATGTGGTGAATGTGTTGTTGGAGTAAACAAGATTTGTTTGTCTTCATATTATTAATCTCTTAGTTGCTATTGTTTATCTTGGTGAAGTTTTTATTTCTTATCAAATTGAATGATTTCATCTGTTGAACTTTATTTCTTATTTTGAATGGTTTCTTCTGGATCATGTTACTTCTTATTTTGAAATAATCCCATCTCTTATTTCCATTAATTTTTGTTATAGTATACGAGTTAAATGTTACATTTTCACTGATGAGCATTTTAATCATTTTAGATTTTGAAAATTAATTTACTTCAGTAAGGAAATTTATTATTATTTTTATATTTTTTTTTTTTTGCTAACTGAATGACTGCCCTTGTGTTACAACAAAAAATGATAACTTTTAAAAATTTATTTAAAATGAGGCAGTAAGCTTTAATATTCAATAACTAAGTACTTTTTGGAAAACACATATCCCATACTCATTAAACTTCTGAAAAAAATAAATAACTATGCTGAAAAAAGGAATTTGCCAATACATCAATTACAGTTTATATTTATGATTTTATTTGAATGATTTCGTTAAAATATGAAGGAAAAAAAAAAAAAAAAAATTCAAACTAAATGTACCAAAATTATCCGATTTTATTTATAAAGT

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02218	HS1_rep	Repeat in HS1/Cortactin	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003134	Repeat	Hs1/Cortactin	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR051243	Family	Polycomb group WD repeat-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10253	POLYCOMB PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006342	Biological Process	heterochromatin formation	Interproscan
GO:0031491	Molecular Function	nucleosome binding	Interproscan
GO:0035098	Cellular Component	ESC/E(Z) complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf55_5.19 global RNA-seq network