Gene detail

Detailed information of CsqKR_Scaf55_35.30 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf55_35.30	SPLICING FACTOR SF3A-RELATED	chr1	21406810	21420753	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf55_35.30

TTTCAGCCAGCATTATTTTGGTCATGAAGTTCCAGCAAGTGACATTTCAGCCAAATTTCAGTAATTGAAATAATGTAGACAGAATATTAGTTAAGTTAGTTTGTTGATAAAAGAATAATATTGGGGAAAATAATAATAAATAAATAAAGCAGTTGATAATGAAAGATTTTATTAAATATATTTGAAATTAAAACTAGAAAAAAATTAATAAATAAATAAACTAGTAGTGCAGAAAATATCAAGCTGAAAAGCATAAAATTTGGTATGAAAATTTCACCATGGGTTACTTTGAAAGAAACATCCTAGCCCTAAAAACGTTCAATATGGCAGCCATTTTCCAAGATCTGTCATAGAAATTGTTTGTGTTCTGAAAATCGATGTAGTAAATAATTATTACGTGGAATCGGAATGTAGTGATCAGGTTCATTTTACTTCGTACTTTCTCGGAATATATCGCAATTTCCCGTCAAACAAGAACGCATAATTCTGTTTCCGCTTCCTGGATAATACAGGTCTTTACGTATTGTTTTCGCATTTTGTTAGCGTTATTTGTTTTTCTGCATGTGCGATGGAATCCCTGCTTGAACAACAAAGACGATACCATGAAGAACGGGAAAGACTTATGGATGCAATGACTAAAGAAATGTTGCATCCAAAAAAAGTTCAACGAGAACAAATAAATTCCGATTATCGATTGAAGCTTTTACTGGATAGATACATGGAATGTACTACAGAACTTAAAGATCTTTATGAAGACAAAGATGGATTGAGAAAAGAAGAAATCCAGGCTCTTGCTGGACCAAATGAATATTCTGAATTCCGGTCTCGTCTTAGTGCTATTGACCGTTTTTATCATCAGCACCCAAATGAGATCAGTGTCCCTATGTCTGTGGAATTTGAAGAAATTGCCAAACAGAGAGAAAGTTCTGCTGAAGAAGTGCAGAATCTGGTTGACTTTACTGATGAGGAGGGGTATGGGAGATATCTAGATCTACACCAGTGTTACGAGAAATATCTCAATCTTAAAGGAACAGAGAAAATTGACTACATCACATACCTCACGATATTTGATCGACTATTTGATATTCCTAAAGACAGGAAGAATGCTGCATACAGAGATTATCTTCTGTTTTTACTGGATTATTTAGCAGACTACACGAACAGAGTAAAACCTCTTCTTGACTTGAATGATGAGATGGACAATGTGCATCAGGAATTTGAGAAGATGTGGACTGAGGGAACTTTTCCTGGGTGGCCGAAAGAAGCTACTGGTGCTCTGACACATTCTGGTGCACATCTTGACCTGTCAGCTTTTTCTTCATGGGAGGAACTGGCATCTCTTGGACTAGATCGTCTCAAATCAGCATTGATGGCACTTGGTCTCAAATGTGGTGGGACTCTGGAGCAGAGGGCTCAGAGACTGTTTGACACAAAAGGAAAAAATCTTGAAGATCTGGACCCTTCTCTGTTTGCTAAATCCAAGCCTGGAAAACAAGGCAAAAACAGAGACTTGGAACGACAGAAGGAGATAGCTGGACTGGAGGCTCAGGTGTACAGACTGGCTGAAATGTTGAGTGAACAGCGAGCAGCAACAAGGGACAACGTTCAGCGCAAACAGGCACGTACAGGCGAGGAGAGGGAAGAGTCTGATGATGAGGAGGTGTCTGATGATGATTCTGATGATGATGATGATGATATTCCTTACAATCCAAAAAATCTCCCTCTTGGGTGGGATGGGAAGCCTATTCCATACTGGCTGTATAAACTACATGGTTTAAATATAAGCTACACATGTGAGATTTGTGGAAATTTCACTTATCGAGGACCAAAAGCTTTCCAGAGACATTTTGCTGAATGGCGACATGCCCATGGAATGAGATGTCTAAGTATTCCAAACACAGCACATTTTTCTAACGTCACACTGATCGAGGACGCTTTGGCCTTGTGGCAGAAAATAAAACACGGAAAGGAACAAGAACGATGGAGAGCTGAAGCTGAGGAAGAATATGAGGACTCACAGGGCAACGTTGTGAGTAAGAAGACTTATGAAGATCTGAAAAGACAAGGACTTCTTTGAATTGTCAGAATGTGTCCATGTTAAATTCATTTATCATCTTGATAAAAACAACAGTTGTCAATGACAAGTTACAGTTCAAACAGAAAACCTTTACTGTATATTGTTTGAATAAAATGTTTGATGAATTCATATTCATCACCTTTTTTTTTTCTTACACTTTCTTGTTAGTATAAATAATTAGGTTTATTTTTGGTTGTTTTTTTATTTTTTTGTAAATGTTGATTTTAAATGTGACAAAAATAATTTTATTGAACTGAAAATTGTATGAAAACCCTCACCATATCGGCTTTAAAATTCAGCCACATCTGAGTGATGCAGACATCTAGATTACAACAAAAAAACACAGAAAAAACAAACAACTAATTTGGGATACAGCCATGTTTAAGTAATAGAGAAAACCAGATGTTAAAAATACCACCACCACCCAAAAACAAACAAAAAAACGTCGGAATACAATTTAACAAGTTTAAATCTCTTTGTAGTTGATTATCATTGTAAGTAAAATGTTTTATTTTTTATTTTATTTTGTTGCTTTTCATTTACCAGTGAATTTATTCTAATCAGTACATGTGTCAGAAAGGTTGTTTTTTATAAAAAAAATATCTGGATAGAGAAATAAAATAATGTCAACTAGTGAGTAAGCAGCAGAAAGGGATAACCTATTTATTCTCTTATTCCTCTAATTTGACAAATGTGGACACCAATCAGCATTGACATGATCCAGACTTAAATCTGCTGTAAAGCTTGTTGCTGACAAAAACCACTGAGGATATCTCTGTGTAATATCAGTTTTCAGACTTAATTCTGTTTTACAGCAGTGATGAGACAGTCTCTTCAAAACATTGGTGGAATAATGGTGAATGCCTTTTTGTAGACTGTGCCAACATGTTGGTCTGTCTAGAAGGTGGAGTAACAGGGAGTGCATTACTGCCAGAACAAAGAAATGGAAGACATTTTGTAAACCATTATTAGGCAAACCAAAATGGCAGATAGTTGGTGGACTCTAATAAAAAAAATATGGCTTGTTGAAGTTTTTCAGTAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11931	SF3a60_Prp9_C	SF3a60/Prp9 C-terminal	Family	Interproscan
PF13297	SDE2_2C	Replication stress response SDE2 C-terminal	Domain	Interproscan
PF16837	SF3A3	Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000690	Domain	Matrin/U1-C, C2H2-type zinc finger	Interproscan
IPR024598	Domain	Splicing factor SF3a60 /Prp9 subunit, C-terminal	Interproscan
IPR025086	Domain	SDE2-like, C-terminal domain	Interproscan
IPR031774	Domain	SF3A3 domain	Interproscan
IPR051421	Family	RNA Processing and DNA Damage Response Regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12786	SPLICING FACTOR SF3A-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf55_35.30 global RNA-seq network