Gene detail

Detailed information of CsqKR_Scaf53_10.28 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf53_10.28	ANION EXCHANGE PROTEIN	chr6	2396249	2412751	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf53_10.28

ATGTTTTCAAAACGTTCTAAAAAATCGAGCTCTCAGGTCCCTGATGGAGTTGCTTCTGTGAATGGCAATGTGGCTTTGCAACACGTGACTTTCCGAGTTGAAGGGGATGAAAACCCTGCCTTCACCAGTGACCATAATCCTATCAGTGTCTCCCCACCTTCTTCGAGTGGCATACAGCAGTCACCAGATCCCTTTTTTCAGAATGTTGGTAGGATCGTTCAAATTAGCACGACCGGTAGTGTGTCAAGTGGCAGAAAGTTGTCTGAGAAGAGTGCAAGTACAACGTCACTCGGAGATCTGACGTTTGATGATTCTTTTGTTGATGAAAATGGGTTAACGTTGATTTATTCACGACATGAGAAAGTTCCACTTAAAGATTTTAGCAATGAGATTCGTGCAATTATGGATGTTCAGGCATTTATTAAAAACACGGCATTGCTGTTGTTTCTGGACAAGACTAATTTGGATGAGATAATTGAGACAATTATTGAGAAGATGCTGGGTCATCTCAACAGCCCAACAAGTTTGGATCAGGCTAAAGCAGCACTTTTTACCCACGACTACGTTCATCAATTAAGTCGAACATTGCAGTGTTCCAGCATTGACCCTGATGGAGGGGGTTTTGTGTATGACCAGAATTTTGTTTGTGCACTGAACACACCAAGTGGAGATAAAGGAACAAAAAATGAACTTGAGACAGGTCGAACTTTTGCAACAATGTTGTCGGATCTAGATTTCCGACAGGCACTTCTCGACGCTTCCAATGAAGCAGCATTCCTGAGTGAGCTGGAGAAACAGATGCACATCCTGTCACAACGACAGCGCAGAAATTCTCAGTGTAACATTCCTCTGAGCAGTATGAATGATCTTGAAAACAATGAGAAGGACCAGAAAAGGAAGATAAAATGTGGAGTTTTCAAAGGCTTGTATTGTGATCTTCGTAGACGACTTCCATTTTACGTGTCTGACTATCTGGATGGAATCTCTGACAAAAAGACTGTACAGAAAGTGGTGTCAACAACATTCTTTTTGTACTTTGCCTGCATTTTACCTTCCATTGCTTTTGGAGTTTTGAATTCATCCAATACAAATGGCATACTGACTGTTGAAAAGGTTCTGTACACGCAGACATTTGGTGGTTTGCTGTTTGCAATTTTTGGTGGCACCCCTCAGATTGTTTTATTAACAACAGCACCACTTGCTCTTTATACAAAAATTATTTACAGCCTTTCAGTGGATTTCCATCTCAATTTTGAGTCCTTTTTTTGCTGTGTTGGACTTTGGAATTCTTTTTTCTTGATCTTATATTCAATGTTTGACTTAAGTGTTCTGATGCGGTACTCAACAAGATCATCTGAAGAAATATTTGCTCTGTTTATTTCAATTGCCTTTGCTCAAGATGCAATTAAAAATACAGTTGAAAATTTTCAAGAAAATTACAATGATGTCACGTGTATTGAGGATTTTTTAACAAACAGCACGCTGATTACGGCTACAACTACCACTACAACTACTGCTTCGATAGTTAATGCATCAGCACTACCAATCATGGCAGACAATGTAGACTGTCCACGCGATGTTAGTCTTCTCTATCTTATACTGTTACTAGGAACTTTGTGGGTTGGAGTTACTCTTTACAACTTTACCCAGACAGATGTGAAAATGGGTAAAAGTTTTAATTCTGCTAGAGATCCTGGTGTATTTCAGTTAGTCACAATGCTGGACCTTCCTGTTGAGGCAGTATTTGGAGCCATGGGTCTTGGCTTCTGTTTGTCTTTACTGTTTTTTATGGATCAGAACATATCAGCAGCACTTGTAAATGCTCCCCAGAACAAAATGAAGAAAGGGACGGCCTATCACTGGGATCTGTTTGTTGTGGCCATTTTGAATGGATGTCTGTCACTAACGGCTTTTCCTTGGTTACACGCAGCCCTGCCACATTCACCTCTCCACGTTAGGGCTTTGGCTGATGTGGAGGAACGTGTTGAACAAGGACACATTCATCAAACAGTTGTACGAGTAAGAGAAACACGACTGACAGGAATATTCTCTCACATTCTCATTGGACTTAGTTTGTTGATTATGCCAGTGCTGTCCTACATTCCAATACCTGTCCTGTATGGTCTCTTCCTCTATCTGGCAGTCACTGCCATTTATGGCAATCAAATGGCTGAACGAATAGCTTTGTTTTTCACAGAACAGGCAGCATATCCACCCAACCATTATATCCGGAGGGTACCCCAGCGTAAAATGCACATGTTCACTGTAATACAGATTACACAGCTTCTAGTGCTTTGTGTCGTTGGTTTCTTTCCATATAACTACTTGAAAATGTTTTTTCCAGTCTTGATATTTCTTCTCATTCCATTCAGACATAAAATCATTCCAAAGATAATTTCACAGAAATATCTGAATGCTATGGATGGGCACTGA

Transcript

CsqKR_Scaf53_10.28

TGGTAATGAAGCCTCTTCTTCGCATTACCTGTATACCTTGCTGCTTGCAGTACATCGATTGAAGCACCATGTTTTCAAAACGTTCTAAAAAATCGAGCTCTCAGGTCCCTGATGGAGTTGCTTCTGTGAATGGCAATGTGGCTTTGCAACACGTGACTTTCCGAGTTGAAGGGGATGAAAACCCTGCCTTCACCAGTGACCATAATCCTATCAGTGTCTCCCCACCTTCTTCGAGTGGCATACAGCAGTCACCAGATCCCTTTTTTCAGAATGTTGGTAGGATCGTTCAAATTAGCACGACCGGTAGTGTGTCAAGTGGCAGAAAGTTGTCTGAGAAGAGTGCAAGTACAACGTCACTCGGAGATCTGACGTTTGATGATTCTTTTGTTGATGAAAATGGGTTAACGTTGATTTATTCACGACATGAGAAAGTTCCACTTAAAGATTTTAGCAATGAGATTCGTGCAATTATGGATGTTCAGGCATTTATTAAAAACACGGCATTGCTGTTGTTTCTGGACAAGACTAATTTGGATGAGATAATTGAGACAATTATTGAGAAGATGCTGGGTCATCTCAACAGCCCAACAAGTTTGGATCAGGCTAAAGCAGCACTTTTTACCCACGACTACGTTCATCAATTAAGTCGAACATTGCAGTGTTCCAGCATTGACCCTGATGGAGGGGGTTTTGTGTATGACCAGAATTTTGTTTGTGCACTGAACACACCAAGTGGAGATAAAGGAACAAAAAATGAACTTGAGACAGGTCGAACTTTTGCAACAATGTTGTCGGATCTAGATTTCCGACAGGCACTTCTCGACGCTTCCAATGAAGCAGCATTCCTGAGTGAGCTGGAGAAACAGATGCACATCCTGTCACAACGACAGCGCAGAAATTCTCAGTGTAACATTCCTCTGAGCAGTATGAATGATCTTGAAAACAATGAGAAGGACCAGAAAAGGAAGATAAAATGTGGAGTTTTCAAAGGCTTGTATTGTGATCTTCGTAGACGACTTCCATTTTACGTGTCTGACTATCTGGATGGAATCTCTGACAAAAAGACTGTACAGAAAGTGGTGTCAACAACATTCTTTTTGTACTTTGCCTGCATTTTACCTTCCATTGCTTTTGGAGTTTTGAATTCATCCAATACAAATGGCATACTGACTGTTGAAAAGGTTCTGTACACGCAGACATTTGGTGGTTTGCTGTTTGCAATTTTTGGTGGCACCCCTCAGATTGTTTTATTAACAACAGCACCACTTGCTCTTTATACAAAAATTATTTACAGCCTTTCAGTGGATTTCCATCTCAATTTTGAGTCCTTTTTTTGCTGTGTTGGACTTTGGAATTCTTTTTTCTTGATCTTATATTCAATGTTTGACTTAAGTGTTCTGATGCGGTACTCAACAAGATCATCTGAAGAAATATTTGCTCTGTTTATTTCAATTGCCTTTGCTCAAGATGCAATTAAAAATACAGTTGAAAATTTTCAAGAAAATTACAATGATGTCACGTGTATTGAGGATTTTTTAACAAACAGCACGCTGATTACGGCTACAACTACCACTACAACTACTGCTTCGATAGTTAATGCATCAGCACTACCAATCATGGCAGACAATGTAGACTGTCCACGCGATGTTAGTCTTCTCTATCTTATACTGTTACTAGGAACTTTGTGGGTTGGAGTTACTCTTTACAACTTTACCCAGACAGATGTGAAAATGGGTAAAAGTTTTAATTCTGCTAGAGATCCTGGTGTATTTCAGTTAGTCACAATGCTGGACCTTCCTGTTGAGGCAGTATTTGGAGCCATGGGTCTTGGCTTCTGTTTGTCTTTACTGTTTTTTATGGATCAGAACATATCAGCAGCACTTGTAAATGCTCCCCAGAACAAAATGAAGAAAGGGACGGCCTATCACTGGGATCTGTTTGTTGTGGCCATTTTGAATGGATGTCTGTCACTAACGGCTTTTCCTTGGTTACACGCAGCCCTGCCACATTCACCTCTCCACGTTAGGGCTTTGGCTGATGTGGAGGAACGTGTTGAACAAGGACACATTCATCAAACAGTTGTACGAGTAAGAGAAACACGACTGACAGGAATATTCTCTCACATTCTCATTGGACTTAGTTTGTTGATTATGCCAGTGCTGTCCTACATTCCAATACCTGTCCTGTATGGTCTCTTCCTCTATCTGGCAGTCACTGCCATTTATGGCAATCAAATGGCTGAACGAATAGCTTTGTTTTTCACAGAACAGGCAGCATATCCACCCAACCATTATATCCGGAGGGTACCCCAGCGTAAAATGCACATGTTCACTGTAATACAGATTACACAGCTTCTAGTGCTTTGTGTCGTTGGTTTCTTTCCATATAACTACTTGAAAATGTTTTTTCCAGTCTTGATATTTCTTCTCATTCCATTCAGACATAAAATCATTCCAAAGATAATTTCACAGAAATATCTGAATGCTATGGATGGGCACTGATCTGTTATGACATCATTCCTGGTTCATAATGTGTTAACATTTTAAAGCAACTGTCACTGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00955	HCO3_cotransp	HCO3- transporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003020	Family	Bicarbonate transporter, eukaryotic	Interproscan
IPR011531	Domain	Bicarbonate transporter-like, transmembrane domain	Interproscan
IPR016152	Homologous_superfamily	Phosphotransferase/anion transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11453	ANION EXCHANGE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005452	Molecular Function	solute:inorganic anion antiporter activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006820	Biological Process	monoatomic anion transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016323	Cellular Component	basolateral plasma membrane	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0050801	Biological Process	monoatomic ion homeostasis	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf53_10.28 global RNA-seq network