Gene detail

Detailed information of CsqKR_Scaf533_0.32 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf533_0.32	CST COMPLEX SUBUNIT CTC1	chr5	3969277	3981550	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf533_0.32

ATGACAAGTGTGGTGGAAGATGTGGTGTCTGGTGATGATGCTGCAGTGATCTTACATTACAAAGACAGACTTCTCACTGGAAGCCTGGTTAACATATGTGGACAAGTATCAACAGTCAGTGAAGTATTTAAAGTGAAGAAAAATCTTCTTTTCATTATAGAACTTGAGAAGGTGTTCATTGTGGTCATGCAAGAAAAGTTTCTACTGTGGCAGCCTCAAATCTTCCCTCAGCAGAAATTTGTGTTTACCAAACTTCGACCAACCACACTGCACAAAGGTATAGCTGTTCCAACTCGAGTGTTTGTTCCCTGGGTTGACAGTGAACTGTATCATGCAGAGAAAGTAAACAGTAATATCATACCTGTACAGGATTGGTTGATGAAGTATACTGACTTGAGACAAGAGACTGAAGACAAAGGAAGCATTGAGACCAAATTAAAAACAGCAGAGAATGGAATTCAACTGGTTTCTTATCAGGGAACAGTTACTAGTACAGCTAATTCAAGATATGGTATCTATGAACTGGATAAGAAGATCAGATTGCATGTGAGTTCAATTCCTGCCAGTCACAAGTTTAATTTTTTAAAAGTTGGAACTCAGATTACAGTCTATAATGCACACCAAGAAGAATCTTCAAAGGAAAGCCAAATTCATCTTCAGTGCTGTATAAAATCATGCATAAAAGTTGTTAAAGAGTGCACAGATTCAGCATCCAGTTTCACAAAGGTATCTCAGTTTTCACCAAATAATCCAGTAGTACAGATTATTGTGATGTATGGTCTGAATGGCAGTGAGATCAACAGTCTACTAAACATGATTCAAAGAATTAACAACAAAACTAAGGACAACAGACAAACTGAAGATGTGATGTTCCAAATTATATCATCATTTTGTTACATGGAGAAAACGACTTCACGAAATCTGGTTGCTGAGTTTTTGAGTGCTCCTCATCATTGTCTGATAACAGAACTGGAGTCATCCAGTAGAAGAATACCCATGCTGCAAGAAATCAGAAAGTTGATACATTCAGCTAAAAGTCTGGAAACAAACCCTGATACCCTAAATAGTATGTACTCTTCTGAGGAAGTTTCTGAACACACCTACAGTAAACAGCATAGCTGGAGTTATCTCCCTCAGGTCATTGGGAAGAATCCTCAACAGATTCTTGTTGGATTATTTGAGTTTTCTCCTGACTCTGGACATCTGACCCTGTCAGATGACACAGGAAGAATGGACATAGTTGTGTGTCCTCAGGTGTCTCACAAACACACCTGTGACGAATCTTGTCTTCAGATCTCACCTGGAAAACCTATAGCATGTCCTAGAGCTCAGCCAGGACTGAATAAATGTTTTGTAGGTGTAAATAAAGGTGAAATCATAACTGAAAATGTTGTATCTGAGTACAGTGGTGCTGTGTGTGAACCAGTGACACAGTTAGGCAGGGTTGAAGTATCGACGCCTCAGTCAAATTATGTGATATATTTACAGCTGTGTTTGACAGATTGTACTGTTCTTGCTACTCCAGTGAAAAGTAATGTCAAAACTAAACTTTCTCCAAACTTATTAAAGACTGATGATGGTGAAGGTTTGGGTGTGAGCGGTAAGGAGTTCTCTGAAAGAAACTCTCAGCTGGTGTATGTCACTCATTTAGAATCTCTGATGGTTAAATCTTTCAGTTCTGGTGTGTCACTGGGATTCTCTCTTCTTGGTTATTTTGTCGATGAGTCTGAACTAACGGAATCTTTTTTCAGGCAAGAAAAAGTCAAAATAATGACACATGGTTGTGATTTAGCTGGTTCAGAAATCAAAAACAGAATATCAACGAATGAGCCATCTAGATCTGAAACCAAAAGAAGAATATCACTTGATGACCCATCCAGTTGTGAAACCAAAAGCAGAATATCAGCTAATGAGCCATACAATTCAGAAATGGCAAATTGTGTATCGTTAAAAGAATTACCAAGTTCTGAAAACTCAAACAGAACGTCAGATTGTGAATCATTCAATTCAAAAATCCCTCAGAGAATATCAGATGATGGTGGAAAGAATTCTGTGTGTGATGTCAGGACTGAACACAAGTTTAAACCAGTAGTGTTGGTGTTCTCAGGCAAATCTGTCAGATGGTACGATTCCTTGGAAACAGAGACATTTTACAGACTTAGAGCCGAGACAAACAAGCCTGTGTTTAAAGCTACAAACTTTTATGAAGCAAAGATAAAGAAAGCTGTTGAATTTTCCAAAGCCAGGATGTGTTTTGAAGCTGATGAAGATATTAATATTGAAAAAGTCATTCTAAAAGAATTTTCTAAAGAAATCAGACCAAAATTTGAACCAGCCCCATTTGTCACAGTGAAGGAAATATTAGCTGAAAGTTTTTCAGGTACTTTGGTGAGTATTAAGGGTATGATTTTGTCCAGGAAACATTTGCCTGACACAAAGGTGTTTAAAATGTGCAGCAGTGATGAACAAGACAACAGAAATAAAACATCAGGTATATCAGTGATGTATGGTACAAGTCTGTGTGTTCAGGTTGGTGCGAGTCAGACTAGTTCTGTGTGTGTCTACATGAACCTGACTAATCTGTCCTATCCCCTGGGACTGGTACCTGGTGCGGGTGTGATGTTTACTCGCCTGGAAAGACACCTGTCAGCAGCTGGTACAGTGTACTGTCTGTTCATCCCAGTGTCCACTGTGTCCGTGTTTAAAATCCATTCAGATACTTCTAGTTTGTTATCACAGCCAGCACTGCACACATTTAAAGATGAAGTTCTAATATCTAAGCCACTGTTTCTAGCAGATTTGTACAATAACTCTACACCAGGACATTTTCAAGTCAACTGTCACATCTGCACATTCATGAAACTGTCTTTACGCATGGTACCTACAGGTTACAACTCAAGTTCTACTCTCAAAGCATGTGCCAGTAGCATCAGTTCATCAGAAGCATCCGCACAAGCCAGTGTTCTGGTTGATGATGGAAGTGCTTCTGCTGTGGTTTCATTTCGCAGTGCTGATCTTGTTCGCAGACTTCTGTGTTTATCTCATGAAGAATGGCAGGATCTTCAGACAGTTCTTCAGCAGCAGGGAGAGATTTTTGTTAATCAATTTTCTGGATATAATCAAGTTGATTCACCTGTGAAAAGTTTTCTTATGCTGCTTTGTGACAGCTTCCAAGTGAAAAGATGTGTTTACATGAGAGTTAAGCGTGGATCAATGAATATCAACAACTTGACAATAGATGAATTTTTGTTAAAAACCATCACTACAGGACTTGCAACTTTTGAAACACGATGTCATCCATATCTTCAACTTGAGTGTCTGAATATTGAAGAGGAAAAATTAGATCACATTATTTTCTGA

Transcript

CsqKR_Scaf533_0.32

AGTTGGTGCATAATGATAATCTATAATGGAAGGAAAGTGTTTTAACAGAACATCATGACAAGTGTGGTGGAAGATGTGGTGTCTGGTGATGATGCTGCAGTGATCTTACATTACAAAGACAGACTTCTCACTGGAAGCCTGGTTAACATATGTGGACAAGTATCAACAGTCAGTGAAGTATTTAAAGTGAAGAAAAATCTTCTTTTCATTATAGAACTTGAGAAGGTGTTCATTGTGGTCATGCAAGAAAAGTTTCTACTGTGGCAGCCTCAAATCTTCCCTCAGCAGAAATTTGTGTTTACCAAACTTCGACCAACCACACTGCACAAAGGTATAGCTGTTCCAACTCGAGTGTTTGTTCCCTGGGTTGACAGTGAACTGTATCATGCAGAGAAAGTAAACAGTAATATCATACCTGTACAGGATTGGTTGATGAAGTATACTGACTTGAGACAAGAGACTGAAGACAAAGGAAGCATTGAGACCAAATTAAAAACAGCAGAGAATGGAATTCAACTGGTTTCTTATCAGGGAACAGTTACTAGTACAGCTAATTCAAGATATGGTATCTATGAACTGGATAAGAAGATCAGATTGCATGTGAGTTCAATTCCTGCCAGTCACAAGTTTAATTTTTTAAAAGTTGGAACTCAGATTACAGTCTATAATGCACACCAAGAAGAATCTTCAAAGGAAAGCCAAATTCATCTTCAGTGCTGTATAAAATCATGCATAAAAGTTGTTAAAGAGTGCACAGATTCAGCATCCAGTTTCACAAAGGTATCTCAGTTTTCACCAAATAATCCAGTAGTACAGATTATTGTGATGTATGGTCTGAATGGCAGTGAGATCAACAGTCTACTAAACATGATTCAAAGAATTAACAACAAAACTAAGGACAACAGACAAACTGAAGATGTGATGTTCCAAATTATATCATCATTTTGTTACATGGAGAAAACGACTTCACGAAATCTGGTTGCTGAGTTTTTGAGTGCTCCTCATCATTGTCTGATAACAGAACTGGAGTCATCCAGTAGAAGAATACCCATGCTGCAAGAAATCAGAAAGTTGATACATTCAGCTAAAAGTCTGGAAACAAACCCTGATACCCTAAATAGTATGTACTCTTCTGAGGAAGTTTCTGAACACACCTACAGTAAACAGCATAGCTGGAGTTATCTCCCTCAGGTCATTGGGAAGAATCCTCAACAGATTCTTGTTGGATTATTTGAGTTTTCTCCTGACTCTGGACATCTGACCCTGTCAGATGACACAGGAAGAATGGACATAGTTGTGTGTCCTCAGGTGTCTCACAAACACACCTGTGACGAATCTTGTCTTCAGATCTCACCTGGAAAACCTATAGCATGTCCTAGAGCTCAGCCAGGACTGAATAAATGTTTTGTAGGTGTAAATAAAGGTGAAATCATAACTGAAAATGTTGTATCTGAGTACAGTGGTGCTGTGTGTGAACCAGTGACACAGTTAGGCAGGGTTGAAGTATCGACGCCTCAGTCAAATTATGTGATATATTTACAGCTGTGTTTGACAGATTGTACTGTTCTTGCTACTCCAGTGAAAAGTAATGTCAAAACTAAACTTTCTCCAAACTTATTAAAGACTGATGATGGTGAAGGTTTGGGTGTGAGCGGTAAGGAGTTCTCTGAAAGAAACTCTCAGCTGGTGTATGTCACTCATTTAGAATCTCTGATGGTTAAATCTTTCAGTTCTGGTGTGTCACTGGGATTCTCTCTTCTTGGTTATTTTGTCGATGAGTCTGAACTAACGGAATCTTTTTTCAGGCAAGAAAAAGTCAAAATAATGACACATGGTTGTGATTTAGCTGGTTCAGAAATCAAAAACAGAATATCAACGAATGAGCCATCTAGATCTGAAACCAAAAGAAGAATATCACTTGATGACCCATCCAGTTGTGAAACCAAAAGCAGAATATCAGCTAATGAGCCATACAATTCAGAAATGGCAAATTGTGTATCGTTAAAAGAATTACCAAGTTCTGAAAACTCAAACAGAACGTCAGATTGTGAATCATTCAATTCAAAAATCCCTCAGAGAATATCAGATGATGGTGGAAAGAATTCTGTGTGTGATGTCAGGACTGAACACAAGTTTAAACCAGTAGTGTTGGTGTTCTCAGGCAAATCTGTCAGATGGTACGATTCCTTGGAAACAGAGACATTTTACAGACTTAGAGCCGAGACAAACAAGCCTGTGTTTAAAGCTACAAACTTTTATGAAGCAAAGATAAAGAAAGCTGTTGAATTTTCCAAAGCCAGGATGTGTTTTGAAGCTGATGAAGATATTAATATTGAAAAAGTCATTCTAAAAGAATTTTCTAAAGAAATCAGACCAAAATTTGAACCAGCCCCATTTGTCACAGTGAAGGAAATATTAGCTGAAAGTTTTTCAGGTACTTTGGTGAGTATTAAGGGTATGATTTTGTCCAGGAAACATTTGCCTGACACAAAGGTGTTTAAAATGTGCAGCAGTGATGAACAAGACAACAGAAATAAAACATCAGGTATATCAGTGATGTATGGTACAAGTCTGTGTGTTCAGGTTGGTGCGAGTCAGACTAGTTCTGTGTGTGTCTACATGAACCTGACTAATCTGTCCTATCCCCTGGGACTGGTACCTGGTGCGGGTGTGATGTTTACTCGCCTGGAAAGACACCTGTCAGCAGCTGGTACAGTGTACTGTCTGTTCATCCCAGTGTCCACTGTGTCCGTGTTTAAAATCCATTCAGATACTTCTAGTTTGTTATCACAGCCAGCACTGCACACATTTAAAGATGAAGTTCTAATATCTAAGCCACTGTTTCTAGCAGATTTGTACAATAACTCTACACCAGGACATTTTCAAGTCAACTGTCACATCTGCACATTCATGAAACTGTCTTTACGCATGGTACCTACAGGTTACAACTCAAGTTCTACTCTCAAAGCATGTGCCAGTAGCATCAGTTCATCAGAAGCATCCGCACAAGCCAGTGTTCTGGTTGATGATGGAAGTGCTTCTGCTGTGGTTTCATTTCGCAGTGCTGATCTTGTTCGCAGACTTCTGTGTTTATCTCATGAAGAATGGCAGGATCTTCAGACAGTTCTTCAGCAGCAGGGAGAGATTTTTGTTAATCAATTTTCTGGATATAATCAAGTTGATTCACCTGTGAAAAGTTTTCTTATGCTGCTTTGTGACAGCTTCCAAGTGAAAAGATGTGTTTACATGAGAGTTAAGCGTGGATCAATGAATATCAACAACTTGACAATAGATGAATTTTTGTTAAAAACCATCACTACAGGACTTGCAACTTTTGAAACACGATGTCATCCATATCTTCAACTTGAGTGTCTGAATATTGAAGAGGAAAAATTAGATCACATTATTTTCTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15489	CTC1	CST, telomere maintenance, complex subunit CTC1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029156	Family	CST complex subunit CTC1	Interproscan
IPR042617	Family	CST complex subunit CTC1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14865	CST COMPLEX SUBUNIT CTC1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0010833	Biological Process	telomere maintenance via telomere lengthening	Interproscan
GO:0042162	Molecular Function	telomeric DNA binding	Interproscan
GO:0045740	Biological Process	positive regulation of DNA replication	Interproscan
GO:1990879	Cellular Component	CST complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf533_0.32 global RNA-seq network