Gene detail

Detailed information of CsqKR_Scaf52_10.8 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf52_10.8	FAS-ASSOCIATED PROTEIN	chr7	7607881	7616948	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf52_10.8

TGCGCTTTTCCTTCAGAATGTATAATACTTAATAGTTAAATATCTAGCAGAACCAGTTTATATTTGTTTTAGGAACTGGTTAAAGATGGCAGAAAAAAGTAAACCAGAATGTGAAACCGATTCATTGCTGCAGCATTTCTGTGCCGTCACAGGTGCTTCAGCAGTGGTCGGGGAGAGATTTTTGGAGGCCTGTAATGGAAATCTGGAACTGGCAATAGGAATGCACATGGACAGTGGCAACATACCACTGACTGACCACATCTCACAACCATCTACCTCATCAACATCAGACGCTCCATTGCCAGGGACATCAGTAGATAGTGGTGCTGATGCTGCTGCAGGTTTTGAAGATGAAATCCGAGCACCAATTCCACAGAAACACGAATGTCTGATAGAAGATAAACCAATTTTTGGATTTCGTCGACGTAGAAGAGGACCTACAAGATCAGTTTTCGACGGTTTTCGAGATTTCCAAGCAGAAGCTAGACAACAAGAACAGTTTGTGAAGACTGGTTTACCATCAAAGAAAAAAACTTTAGAAGATCTGTTTCGTCCACCCATTGACTTGACCTTTAAAGGAACTTTTCTCAGTGCTCGAGATGCAGGAACAAATCAAAACAAGTGGTTGATGGTGAACATACAGAATGTACAAGAATTCCTTTGTCAGGTTCTCAATCGAGATGTGTGGAGTAACCCAGTGGTGAAAGATCTCATAAAGTCACATTTCATTTTTTGGCAGGTTTATCATGACAGTGAAGAAGGTAAAAAATACATGCAGTTTTATGAAATCACAACATGGCCTTATATTGCTATTCTTGATCCACAAACTGGTGAAAACATGGCTGTGTGGAACAAAGTAGATTCTCCAGCATTTTCTAATTTAATTACAGAATTTCTCTCTCTACATCCAGACCCAGAGGGAGCAGATTCACCTCCTTGTAAAAAACTCAAGACGGAATGCAGCCTGCTGGAAGCCAGCGAAGAGGACCAGATACAAGTAGCTATTCAGCAGTCGCTCAAACAGCCAGAGAAACGAGAGCAGCAGATTGTCATGTCGGATTCAGAATGTCTGTCCGACTTGGAGACGTTTACTGATTCCGACCACGAGTCGGACAGTGCGAGTGAACAGTTCAGTTCCGAAACAAACACTTCTCCTCCACCAAAACCCACGAAACCCTGTGCTCAAAACAGTGTAAATAACAAACAGACCAGTGAGACAACGACGCACAGAACTAAAAAACAGTCCGATTCATCTTCCAAGGCAGCTAAAGACTCTGTTTCCAATTCACATATTCCTGATAGAAGTCGTATCTCTGACAAAAGTAAATGTGTCGATGACAAATCTCAAAGCACCGCTCAGTTTGTGGCTGATTTCGGCAGGCAGTCTTCCATAGCAACTGTAGATAGTGCTGTTACAAATGGTAAAGACGAAGCTGATGCTTGCCAATCCAAGAAGCAAGTTAAAAATAACCAGGAAGACTGGAAACAGTTTATGGGAAATCCAGAAGATCCTACAACAAATTTAATGATTCGTTTTCCTGATGGTAAAAGGCAGCAATTATCATTACCATGTTCTTCAGCATTGCAGGCTGTTATGAAATATGTTATCTCCTACGGCTTTTCTGACGAACATTATGAACTTGTGACGAATTTCCCAAGAAGACAGCTATCCAAGATGGACTTTGAAATAACAATCAAAGAAGCAGGTCTTCATCCACAGGAGACAATCTTTGTTCAGTCTAGATGATGCAACAGTTGCCACAGTTTGTAGCAGCTGCAGCTGAAATGAAAATGTCACCGTCGAATGTGAATGTTTTTAATCACTGCATAACTCTAATGGATAACGATGAAGCCCTGTTTAATACGTTTAGGTCATATTTATCTTTGTGGTGTTTATCTTTGTAAAGCAAAGGTAACTAATTTAATTAAGCTTGTTGGTGAGGACTGTTGCATGTACATGGGGAAAGACATTCAGTTTTCAGTGGAAAATTATAACCATGATAACAGTTTATGAGGTGAAGAAGATTCATAGTGATTGCTGTTGTTACGATAGGAAAATATAATCACTGCTGATTGGGTTCTGTGGAGGTAAAATGTATTCCAATTGCTAACAGATGCCTTGAAAGGTGTTATAATTATTCACAGATTAAGCAAAAGTTTCTGAAGTTAATTTCAAATTTCAAATTACTAACAGATGAAATGAAAGATGTTCAAGTTATTCACAAAAGAAATGAGATATTCACATTATTCACAAAAGAAATGGCAGATATTCACATTATTCACAAAAGAAATGGCAGATATTCACATTATTCACAAAAGAAATGAGATATTCACAAAAATGAAAGATATTCATTTTTCACAAAAGAAATGCAAGCTATTTAAGTTATTC

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD\|UBX

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00789	UBX	UBX domain	Domain	Interproscan
PF13899	Thioredoxin_7	Thioredoxin-like	Domain	Interproscan
PF14555	UBA_4	UBA-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001012	Domain	UBX domain	Interproscan
IPR003903	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR006577	Domain	UAS	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036249	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR050730	Family	UBX domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23322	FAS-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf52_10.8 global RNA-seq network