Gene detail

Detailed information of CsqKR_Scaf50_24.15 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf50_24.15	WOLFRAMIN	chr9	17693322	17698444	-

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf50_24.15

ATGGCGGAAGAAGAGACAGTAACTTCAGAAAAGCTAAACCAGCTGAAGACAGAAGCTGAAAATGGATTGGAAGAATCAAAGGTATTTCTGGCTAAATACCATCTCCAATTGGCTGATTCTGGTATCGATGCAGAGGAGAATAAAATCCAGGCCTTGGATTGGATGATAAGTGCATCAAAACAGGGAAATGAGGAAGCAACAGAACTTTTGAGGAAATACATTGAACGTGGATTTGAAATTGATGAAAGTCGAGCCTATGATATCAGCTGGTGTTTGAAAACTTCATCCAGTGAAAAGCACATTCGCCAAGCAGCTCGTAACTTGTTCCATCGTATGAACACAACACACAAAGGAGTTATCTCCCGTGAGGAATACTTTGGTGCTGTGAAGTCAGTAACTGATAAAATTCAGGAACAGAAGTTATTAATGGCTGCAGGTAAGAAGATAGGTGACAGCATAACAGAAAATGATTTTGTTAAAATGCTCTCCAAAAGAATCCAAGGAACGATAACTCTAACATCAGAAGAGCTTGCTGAAACAAATGTGTCATATGAATCAGCTGGATATGTGACAAGAATTCTGAAGTATCCAAAGCAGACAGTCTCTGTCATTGTTGACCAGGCTCTGGAGTTTTCCTCGAAGCAAGGAATGGACTGGGTGATATCTCTGATACCCACAAATCAACTCTATCTCCTTGGTCTACTCTTCATCTACAGTTTTCTTACTCCTGCTTTCCTACTCTTTCTTCTTCCCCTGTGCATCTTTTACTTGGCTTTCATTGCCCTAGTCATATCTACTCTGCAAATGTTTTACAAGAAAAAGAAAAGAACAGAAGCAACAACATTGGCAAACATCCTGAAAGAGTACGATGTAACAATTGATATTGACAAAACAGAGTCACAGTATACGTGGAATTCACTGACGCCATATTTAATATTTTTTGTTAATCTGCTGATTGCTATAGCATCATTCTCAGTAGCTAACAAGTCCTATATACCCTGTGCAGAGATTTGTATAGTTTCCTTGGTGATGACTGGATTTTGTTTCTTTGGTTTAAGTGACCATCATGACAAAGTAACAATATCTGCCATGGTTGCTAACTTTATGGCATCACTTCCTGTTTTCCTGCATGTTCCCAATGTACCTGGTTTGAAACAGGCTGTCAGTTTGTTCACTCAACCATTTCTGGCCTTTGACTTGGGGTTCGGAGTGAAACTTAATGTTAGTTTTCCATCAGTGGCTTATGCTATCATCCCTCTGTTCTTTCTGAGAATGGCAATGCAGAAATCCTGGCAGGGAACATACCGAGTTCTCATTCCACATCTTGTCTGTTATTTCTGGTGGAACTTCTTCACGTCAACTTTCCCATACACAACATGGCTTGGTCTCATTAGGGCAGTTTTTGGTTATCTTCTTCTTCCTCTTATTCTACCCGTCAGTTTTGTGGGTTTTCTAGGAATTGCAGGGTTTGCAGTGTACAAAGCCATCCAGTCAGCTATGATTGGAAAAGTCATCATCACTTTCTGTCTGTTGGCTGTTCCTGCACTTCTCACTCAGACCAAACACATCTTTGGCAAACAGTTTGATGCCAAACTTGGCATCCCTAAAAAGGTTATCATGATACTGTTTTCTCTTTTGGCAATTGTCCCTCTGATTTTTGTCAAACTGCCTTCTTTTGAGACTAAGCATTCTGCACCTCTGACATGGGACATATATTCTACTCTGTGTATTCCCCGAGGTACAGAACACATTTCCCAAACTCAGATAAAATGTAGTCATTTGACAGGCATGAAAGTAACATGGGTTGGGAACCTGCAGGCTGTGAACATTGTAAAAACAGAAAACACAGCTGAGTCAGTGTTTGGCAGTTTGCCTTCCATCATCACCAAACCACTTAAATGTATTTTTGGAGTCAGGTTTGGAGATTGTGCACAGATATCTGATACACACGACAGGGAAATTTGTCTTCTAGTGAAGTCACATGGTAATGACTGCCATGTCAAAAACCATGATAAATATCAGTTTGAACTTTCTGTTAAAATTAACAACACTGTACTCAAGGTAAGTGCTGGTCACAATTTTAACAGTACAATCCAAGCTCTGGATCAGGGTGATGAGGTTAAGTTTAATGCAACCCTCACAGGCAACCTTGGCACTTCAAGTCCCAAGTTAAAACTAACATCAATAACATCTTTAAACCGTGCTGACCAGATTTCCATGACACTGCTAGAAGATGATCAAGACTTGTACAGGAATGTGGTACAGGAAGCCATTTCTTTTACTTTTAACTTCATCTGGTTCCCTGTGTTTGAATATTCAGTCAGTTAG

Transcript

CsqKR_Scaf50_24.15

ACTTATCACTGCTTCAGAAACGATAGCGATGGCGGAAGAAGAGACAGTAACTTCAGAAAAGCTAAACCAGCTGAAGACAGAAGCTGAAAATGGATTGGAAGAATCAAAGGTATTTCTGGCTAAATACCATCTCCAATTGGCTGATTCTGGTATCGATGCAGAGGAGAATAAAATCCAGGCCTTGGATTGGATGATAAGTGCATCAAAACAGGGAAATGAGGAAGCAACAGAACTTTTGAGGAAATACATTGAACGTGGATTTGAAATTGATGAAAGTCGAGCCTATGATATCAGCTGGTGTTTGAAAACTTCATCCAGTGAAAAGCACATTCGCCAAGCAGCTCGTAACTTGTTCCATCGTATGAACACAACACACAAAGGAGTTATCTCCCGTGAGGAATACTTTGGTGCTGTGAAGTCAGTAACTGATAAAATTCAGGAACAGAAGTTATTAATGGCTGCAGGTAAGAAGATAGGTGACAGCATAACAGAAAATGATTTTGTTAAAATGCTCTCCAAAAGAATCCAAGGAACGATAACTCTAACATCAGAAGAGCTTGCTGAAACAAATGTGTCATATGAATCAGCTGGATATGTGACAAGAATTCTGAAGTATCCAAAGCAGACAGTCTCTGTCATTGTTGACCAGGCTCTGGAGTTTTCCTCGAAGCAAGGAATGGACTGGGTGATATCTCTGATACCCACAAATCAACTCTATCTCCTTGGTCTACTCTTCATCTACAGTTTTCTTACTCCTGCTTTCCTACTCTTTCTTCTTCCCCTGTGCATCTTTTACTTGGCTTTCATTGCCCTAGTCATATCTACTCTGCAAATGTTTTACAAGAAAAAGAAAAGAACAGAAGCAACAACATTGGCAAACATCCTGAAAGAGTACGATGTAACAATTGATATTGACAAAACAGAGTCACAGTATACGTGGAATTCACTGACGCCATATTTAATATTTTTTGTTAATCTGCTGATTGCTATAGCATCATTCTCAGTAGCTAACAAGTCCTATATACCCTGTGCAGAGATTTGTATAGTTTCCTTGGTGATGACTGGATTTTGTTTCTTTGGTTTAAGTGACCATCATGACAAAGTAACAATATCTGCCATGGTTGCTAACTTTATGGCATCACTTCCTGTTTTCCTGCATGTTCCCAATGTACCTGGTTTGAAACAGGCTGTCAGTTTGTTCACTCAACCATTTCTGGCCTTTGACTTGGGGTTCGGAGTGAAACTTAATGTTAGTTTTCCATCAGTGGCTTATGCTATCATCCCTCTGTTCTTTCTGAGAATGGCAATGCAGAAATCCTGGCAGGGAACATACCGAGTTCTCATTCCACATCTTGTCTGTTATTTCTGGTGGAACTTCTTCACGTCAACTTTCCCATACACAACATGGCTTGGTCTCATTAGGGCAGTTTTTGGTTATCTTCTTCTTCCTCTTATTCTACCCGTCAGTTTTGTGGGTTTTCTAGGAATTGCAGGGTTTGCAGTGTACAAAGCCATCCAGTCAGCTATGATTGGAAAAGTCATCATCACTTTCTGTCTGTTGGCTGTTCCTGCACTTCTCACTCAGACCAAACACATCTTTGGCAAACAGTTTGATGCCAAACTTGGCATCCCTAAAAAGGTTATCATGATACTGTTTTCTCTTTTGGCAATTGTCCCTCTGATTTTTGTCAAACTGCCTTCTTTTGAGACTAAGCATTCTGCACCTCTGACATGGGACATATATTCTACTCTGTGTATTCCCCGAGGTACAGAACACATTTCCCAAACTCAGATAAAATGTAGTCATTTGACAGGCATGAAAGTAACATGGGTTGGGAACCTGCAGGCTGTGAACATTGTAAAAACAGAAAACACAGCTGAGTCAGTGTTTGGCAGTTTGCCTTCCATCATCACCAAACCACTTAAATGTATTTTTGGAGTCAGGTTTGGAGATTGTGCACAGATATCTGATACACACGACAGGGAAATTTGTCTTCTAGTGAAGTCACATGGTAATGACTGCCATGTCAAAAACCATGATAAATATCAGTTTGAACTTTCTGTTAAAATTAACAACACTGTACTCAAGGTAAGTGCTGGTCACAATTTTAACAGTACAATCCAAGCTCTGGATCAGGGTGATGAGGTTAAGTTTAATGCAACCCTCACAGGCAACCTTGGCACTTCAAGTCCCAAGTTAAAACTAACATCAATAACATCTTTAAACCGTGCTGACCAGATTTCCATGACACTGCTAGAAGATGATCAAGACTTGTACAGGAATGTGGTACAGGAAGCCATTTCTTTTACTTTTAACTTCATCTGGTTCCCTGTGTTTGAATATTCAGTCAGTTAGGAATCTAAAATGAAATTTGCTAAGGGTAATTCAAGAGAAGGTATCTTTTCAGGGTGATCTTGACGTATTCTAGAGTTGTCTCCCATGTTATATTTGTTTTTAATATTTATAAATATTATTGTAGCTTTTATATGATGGACTGAAGGTTTCAACATGCTTATTGCTTTTTAGAATCAAAAAGAGGATGTTATTCTTTGTGTTTAATGATAAGAACCAGTATTTCTGATTTGTGATGGCTACAAAGTGGGGAAAAAGATTTCAATCATATGTAAAACATGTTGAGTCATATTTAAGTACTATATTAATATACATATCAGTTACATTACATACTAAATATATAAAGTCCCTAATTTCCTCTGCAGTTAATTAGATGAAATAATATTTATTATTAGTATGTTCAAGATTTTATATAAATATTACATTTATTTTATCAAACCAGAAACTGGAAAAATTAGTTAAAATAAGAAAGCAAACACTACCTAGAGAACAGTTTAATTTGAAATTATGTGTGCAGTAATGATATTATGTATTTTAATGTTAACAAGCAAGGCTTCATTTTACATTTATTATTTGAAATGAAGTAAAAGATATTAGTCAAACCTAGAAGATTCATAACTTGTAATATATATTAAAAAGCCATAGTATATATATATATATATATATATATATGTAAAAAGACTTGAAAACAGTTTGACAGACTCACAGAATCTCCCTATGGCCATGTCATAAGGTAGTTTACTATATCAGAATAATGTTACTGCTCTGAATGCAAGAATATGATAATAAATTATAATAGGTTTTTCTTGAATGTATTATGTATCTTTATAATAAATTTTATAGAAGTGTTCTTTGTAACCATGCCTGTGATATACTTGTTAAATTTCGAAATATTTATAATTTTACATATTTAAGTCTTTCAATTGCATCATGCATAAAAATGAAAAAATGAATGGATAATGCAAATATTATTCTTTGGCTTTTGATGTTTGTTGCTTTTCAGTATTTTGTTAAATAAACGTTTAATAAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19913	WCOB	Wolframin C-terminal OB-fold domain	Domain	Interproscan
PF20053	WC-rich	Wolframin cysteine-rich domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048	Domain	EF-hand domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR026209	Family	Wolframin family	Interproscan
IPR045400	Domain	Wolframin, cysteine-rich domain	Interproscan
IPR045461	Domain	Wolframin, OB-fold domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13098	WOLFRAMIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0030176	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0030968	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0055074	Biological Process	calcium ion homeostasis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf50_24.15 global RNA-seq network