Gene detail

Detailed information of CsqKR_Scaf507_1.11 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf507_1.11	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	chr9	5170334	5180628	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf507_1.11

ATGTCCTTTCTAGTTACTGAAGAGTTGGAAAATAACACGGAGACCAAAAATGAAATGTCAACTGCCCCATCAGCTTATTTTAATCAGAAAATTTCCATACCTTCTTCTACCAACCAAAAGTTCAGTTTCAGGAAACTATGGGCATTCACAGGTCCAGGTTTTCTTATGAGCATAGCTTACCTGGATCCAGGAAACATCGAATCTGACCTTCAGTCAGGCTCTGTGGCAAAATTCAGGTTGTTATGGGTTTTAATGGCTGCCACTATGCTGGGTTTGCTGCTGCAGAGACTGGCTGCAAGACTTGGAGTTGTCACAGGAATGCATCTTGCAGAAATGTGTTACCGTCAGTATCCACGGATACCTCGAATCATCCTCTGGCTCATGATGGAAATAGCCATTATTGGCTCAGACATGCAGGAGGTTATTGGAACAGCCATAGCATTTTACTTGCTGTCAGATGGAAAAATTCCATTGTATGGCGGAGTACTGATTACTATAGCCGATACTTTCACATTTCTTCTTCTTGACAAGTATGGTCTCCGGAAACTGGAAGCATTTTTTGCCCTTCTTATAACCACAATGGCATTGACATTTGGATTTGAGTACATCACTGTAGCTCCTGATCAAGGCCAGGTTGTCAAGGGTCTTTTCTTCCCCTGGTGTGAAGGATGTGGATCCAAACAGCTCCTGCAGGCTGTAGGCATTATAGGAGCCATCATCATGCCTCACAACATTTACCTCCATTCTGCTCTCGTGAAGTCACGTGATGTGAACAGAAACAAAAAAGAAGAAGTGAGAGAAGCCAACATGTATTTCTTCATTGAAGCAGCCATTGCTCTTTTTATTTCTTTTCTTATCAACATTTTTGTTGTGTCAGTATTTGCAGAAGGTTTCTATGGAAAGACCTCAAAAGAGATTTTGTCTTTCAAACTCATTCATGTGTTCAATGGAGTTTTTCTTGGCTGCCAGTTTGGTCCAGCAGCTATGTACATCTGGGCTGTGGGTCTGTTTGCTGCAGGTCAAAGTTCAACTATGACTGGAACATACACTGGACAGTTTGTGATGGAGGGATTTTTTAATCTGCAGTGGAAAAGATGGCAGAGAGTGTTGTTGACTCGAACGATTGCCATCTTGCCAACAGTGCTAATTGCAGCATTCGACGGCATTGACAATCTGACGAAAATGAATGACCTGCTCAATGTTCTCATGAGTCTTCAGCTTCCTTTTGCTCTTTTTCCCATTCTAGCATTCACGAGTTCAAAAGCCATCATGAATGAATTTGCTAATGGAAGAACAATGAAAATCATCTCGAGTTTGTTGGCAGTATGTGTGATTGCCATCAACATATATTTTGTTGTTGTTTATCTGAATGAACTTCCACATTTCTGGGCAGTTTACCTTGCTATAGCTGTTGTCATGTTCTTCTATATGCTTTTTGTTATCTACCTGGCTTTCTTTTGTTTGGCTGTAGCTGGAGTTAGCAGTGTAAATAACTTTAAACCGTTTGGTTTGAATTTTGGACCAAGGTATGCTTTGGAACCAACCGTGACACCTGAAGAAAGCACAACAGAACTGGCAGTCTCATCAGAAGATGAAACCAGAGTCAGTGATGACCGGGCATTTGACCTTAACACTCCCTATAACAGATGACCTTTGACCTGAGGCTTAACGAATGACCGGTCACTCCAGTGTAAATGGAATGTGATTTCAGCATTGTTTTTATCGCATTCATTTTTGAGTATCAGAGCTGACGCAAAGATTTGTGTGATAAAGGACATTAGCCCAGTAGGTAACCTTTATTTCCTCATAACAGATGACCTCAGAATTGTGCATTATCAGTGACCTTTGAAATGTAAAACAACATAACCAGGATGTTGCATGTACAGGATTGCATGAATAATTTATATATTTTATATAACAGATTACCACAATTTTGTTTTTGTACCCTTTGAAACTAACACTAATTTTAACATGTGGCTTTGACATTTAGTATAATATGACCTTGAAATTTGGTATAATGTGATCATGGTATTTGGTTTAGCAAGACTTTGATGCTAAAATAACATATGAGAACAGATCAGTCTAATACTTTTTTTGTAAAACAGATAATCCTTTGTCCAGAGGTTTACAGATGACCATTTTTTTTTTTTTTTTTTTTTTTTATTAACAAATTATCTCTAGCTTTGTTCACAGCAGAAACCACATTCCAGGAAAAATTGTCTGTCTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01566	Nramp	Natural resistance-associated macrophage protein-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001046	Family	NRAMP family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11706	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005381	Molecular Function	iron ion transmembrane transporter activity	Interproscan
GO:0005384	Molecular Function	manganese ion transmembrane transporter activity	Interproscan
GO:0015086	Molecular Function	cadmium ion transmembrane transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0030001	Biological Process	metal ion transport	Interproscan
GO:0046873	Molecular Function	metal ion transmembrane transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf507_1.11 global RNA-seq network