Gene detail

Detailed information of CsqKR_Scaf461_1.42 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf461_1.42	ANKYRIN REPEAT AND DEATH DOMAIN-CONTAINING PROTEIN	chr12	18369810	18378430	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf461_1.42

ATGAAGTTAAATTCAGACGAAACAACCGCTATTCTCGGTGATGTTGATCGAACAATGACCGACGAGATGTCAGTAACATCAAAAGCCTGTTTGGTGGAGAGGAGTGTTGTGCGATCTGACAAGGAGGCAAATGGCGCAGTGAATGGGAAGAAGTTTATTCCTATAGTCGACTGTGATGGGATGATAAGTCTAAAACGAGAACCAGTTGAAACATCTGACTCCGAGGACAACACTGACGTCTGCAGCAGGGAACAGGTGCAGTCAAACATGGCTGACAGCGAAGTGGAGAAAGGTTATGACGAACACGATGAACAGAAGATGAACAAGAGAACTGACAAAGACGTTGATGTAGTTGCCGACAAGATATTAAATCTGAAGCTGGAGAACGACGATGAGAAGTTTGAAATTAAAGAAGGTGAAGGCAAGAAAAGTGACGATGTTGACTCATACATCCACATCTACCCAGCAGATATCAAGGTTGAAGATGAAGTGGGTCAGACTGAGGATGATGCTGTACAGAATCTGAGAGAGCGAGGACCGACACGAGGCCGCCCGTCATCCTTCCTCCCGGGCACCCAGGCTGTCTACAGCAGCGGCTACAGCTTTCAGCCAGGACTGATGACAAACAATAACTTTTATGATTTTGCTGTGGAAACCAGACCAGGGAAGCGCAGGCCTGATGATGATCTGATTACACCGTGGAAGTACAACCGACCTCCAGAGGAGGTGAATGACCTTGATAACCCCAGAAATGACATGCAGAAGAATTCAGTAAACATACCAGCAATGAGTGGTGGTCAGGTGACGATCAGTACTCCAGAAATAAATCCTCCAAAACTGTTCCATCAGTTTTCTGAGAGTGATGCCAATGAGATTCTGCGAACACTTGAAACCATAGACCAGACGAATTTCAATGGGATGTATAACAGTGGCATACCTCATTCCCATCTGGCAGTCGCAGCAACAACAAGCACATCAATGTTACCTGGACCAACAGTTTCAGGATCAGATGTCATCACGCAGCTGAATGATTTTCGTGACAGCAGCAGTGTCATTGACAGTGGCATTGATTCGTGCAGTGATGGATACAGCTCAGAGCCAAGCCCACTCAGTGATGTATCTGTGTTGTCTCCGCCTCCATCCAACATGTCGCACATGTCTTCTGACAGTGGGGTATCAATGGGAAGTGTCCTTAGTCCCAAAGAATCGGTTATCATGGATACCATGTCTCCCAGAAGCCAGACGAGCACATACGATGGGATGATGTCTTCACCAAGAAGTCAGAACGGTTGCTATGACACCATTTTGGACCCAACACCAATTACCAAGGCAATGGCATCACCACGAAGTCAGCAAAATGGCTGTGACAACATCAGCAACCTGTCTTCGTCACCTGCTAACAGTGACATTGGTGGAACATGCAGCGGCTTTCAGTCACCTAATTTGAATGGACAAAATGGCAGGTCCCTAATGCATCTGGAGGATGTTCAACAAACATCCCTGTTTCAACTTCAACCTTCCAGAGTGGTTTTCTACCTACACACGTCAACAAGTTATCAGTGGCAAATGAAGGATCTCCTATCTACAGACCAGCTCCTCAGTCATCTGAAGCTGCAGTTCCAACAACCTCAGTGGTTTCCAATGTCAACTGTGATTCCTATGACCATTCCATCACATCTCATAAACAGCAGTACAGCAAGTACATCAGCCACAACAGCAATGACATCACGCATCGTAATCATCCCCAACAATCAACAGCCACAGGCTATTGTTGTAGTGAACCCTGCACCACCTCTGCCCAGAAAACCACAGTATGTTCCAATAAAACCAAAACTACCACAGCCTGGAGCAGCAACTACAGCAACAACATTGCCTACAGTAATTAGTGGAAATTCATCTCTGAAAACAACGAAGGCAAACAACTCTCCAAAGAATCAGAAGAAAGTGAGTGTGGCCAATTCACCCAACAGTGTAGGTCAGACTGGGCAAAAAGAAGTCCTTGTGACTGCAAAGAAGAACAACAGTCAGAACACGCTGAACATTGCTCGCCGACTTGTAGCGAACATGAGTCGAGAACAAATACAATACCAGGACAAAGATGGAGACTCAGAAGAACTGCAGTACATGGTTGATGTTGAGAATAACCTGCGACAGTGTGTTGACAACGGCGCACGTGAAGTTAGGGCAGCAATTCACTGCGCATCGTCACAAGGACAGGATTACTTGACAACACTGCAGCGCCTGCTTAAACAGACCGATATAAACCTCAATGTTGCCAATTCCGATGGTCAGACAGCACTTCACTGTGCCATTCGTAACCATGGGAAACCACGCAAGGATGGGACAGGAATAATAAACAGCATTCCTATAATTGAACTGCTTATTAAATCTGGAGCTGATCCTAATGCTCAGGATAAGAAGAGTGGAAAGACCCCACTCATGTATGCGATGGAGTCGAAGAACATCGACCTCATTGAGAAAACTGTCAAGGCTATCACTGCTGCCGACCCACACAAGTTTCGCAGCTACCTGAAGGCGCAGTCGTTTGACGGCAAAAGTTGTCTTCGTATTATAGAGAGCATGAAGGCAGAATTCAATCCAGAGGCTTGGGAACGACTCGCTCACTTGTTTCCTAGCAACGGCCGGGGAGGGGCCAGTCTGTAA

Transcript

CsqKR_Scaf461_1.42

TCATTCTTAGGGGAATCCCCTTTCGCAATTTCTTTGACGTCATGGCTAAATTGGCCAATCGATATAACTTCCGGCTTCAAAGGCTGATTCTTGTGAGCTAGGTGATTTGCGGTAGAACATTTTCCGTTTTATATTTAGAGAAAGAAAGTCTTAGTCCAAAAAAAAGATGAAGTTAAATTCAGACGAAACAACCGCTATTCTCGGTGATGTTGATCGAACAATGACCGACGAGATGTCAGTAACATCAAAAGCCTGTTTGGTGGAGAGGAGTGTTGTGCGATCTGACAAGGAGGCAAATGGCGCAGTGAATGGGAAGAAGTTTATTCCTATAGTCGACTGTGATGGGATGATAAGTCTAAAACGAGAACCAGTTGAAACATCTGACTCCGAGGACAACACTGACGTCTGCAGCAGGGAACAGGTGCAGTCAAACATGGCTGACAGCGAAGTGGAGAAAGGTTATGACGAACACGATGAACAGAAGATGAACAAGAGAACTGACAAAGACGTTGATGTAGTTGCCGACAAGATATTAAATCTGAAGCTGGAGAACGACGATGAGAAGTTTGAAATTAAAGAAGGTGAAGGCAAGAAAAGTGACGATGTTGACTCATACATCCACATCTACCCAGCAGATATCAAGGTTGAAGATGAAGTGGGTCAGACTGAGGATGATGCTGTACAGAATCTGAGAGAGCGAGGACCGACACGAGGCCGCCCGTCATCCTTCCTCCCGGGCACCCAGGCTGTCTACAGCAGCGGCTACAGCTTTCAGCCAGGACTGATGACAAACAATAACTTTTATGATTTTGCTGTGGAAACCAGACCAGGGAAGCGCAGGCCTGATGATGATCTGATTACACCGTGGAAGTACAACCGACCTCCAGAGGAGGTGAATGACCTTGATAACCCCAGAAATGACATGCAGAAGAATTCAGTAAACATACCAGCAATGAGTGGTGGTCAGGTGACGATCAGTACTCCAGAAATAAATCCTCCAAAACTGTTCCATCAGTTTTCTGAGAGTGATGCCAATGAGATTCTGCGAACACTTGAAACCATAGACCAGACGAATTTCAATGGGATGTATAACAGTGGCATACCTCATTCCCATCTGGCAGTCGCAGCAACAACAAGCACATCAATGTTACCTGGACCAACAGTTTCAGGATCAGATGTCATCACGCAGCTGAATGATTTTCGTGACAGCAGCAGTGTCATTGACAGTGGCATTGATTCGTGCAGTGATGGATACAGCTCAGAGCCAAGCCCACTCAGTGATGTATCTGTGTTGTCTCCGCCTCCATCCAACATGTCGCACATGTCTTCTGACAGTGGGGTATCAATGGGAAGTGTCCTTAGTCCCAAAGAATCGGTTATCATGGATACCATGTCTCCCAGAAGCCAGACGAGCACATACGATGGGATGATGTCTTCACCAAGAAGTCAGAACGGTTGCTATGACACCATTTTGGACCCAACACCAATTACCAAGGCAATGGCATCACCACGAAGTCAGCAAAATGGCTGTGACAACATCAGCAACCTGTCTTCGTCACCTGCTAACAGTGACATTGGTGGAACATGCAGCGGCTTTCAGTCACCTAATTTGAATGGACAAAATGGCAGGTCCCTAATGCATCTGGAGGATGTTCAACAAACATCCCTGTTTCAACTTCAACCTTCCAGAGTGGTTTTCTACCTACACACGTCAACAAGTTATCAGTGGCAAATGAAGGATCTCCTATCTACAGACCAGCTCCTCAGTCATCTGAAGCTGCAGTTCCAACAACCTCAGTGGTTTCCAATGTCAACTGTGATTCCTATGACCATTCCATCACATCTCATAAACAGCAGTACAGCAAGTACATCAGCCACAACAGCAATGACATCACGCATCGTAATCATCCCCAACAATCAACAGCCACAGGCTATTGTTGTAGTGAACCCTGCACCACCTCTGCCCAGAAAACCACAGTATGTTCCAATAAAACCAAAACTACCACAGCCTGGAGCAGCAACTACAGCAACAACATTGCCTACAGTAATTAGTGGAAATTCATCTCTGAAAACAACGAAGGCAAACAACTCTCCAAAGAATCAGAAGAAAGTGAGTGTGGCCAATTCACCCAACAGTGTAGGTCAGACTGGGCAAAAAGAAGTCCTTGTGACTGCAAAGAAGAACAACAGTCAGAACACGCTGAACATTGCTCGCCGACTTGTAGCGAACATGAGTCGAGAACAAATACAATACCAGGACAAAGATGGAGACTCAGAAGAACTGCAGTACATGGTTGATGTTGAGAATAACCTGCGACAGTGTGTTGACAACGGCGCACGTGAAGTTAGGGCAGCAATTCACTGCGCATCGTCACAAGGACAGGATTACTTGACAACACTGCAGCGCCTGCTTAAACAGACCGATATAAACCTCAATGTTGCCAATTCCGATGGTCAGACAGCACTTCACTGTGCCATTCGTAACCATGGGAAACCACGCAAGGATGGGACAGGAATAATAAACAGCATTCCTATAATTGAACTGCTTATTAAATCTGGAGCTGATCCTAATGCTCAGGATAAGAAGAGTGGAAAGACCCCACTCATGTATGCGATGGAGTCGAAGAACATCGACCTCATTGAGAAAACTGTCAAGGCTATCACTGCTGCCGACCCACACAAGTTTCGCAGCTACCTGAAGGCGCAGTCGTTTGACGGCAAAAGTTGTCTTCGTATTATAGAGAGCATGAAGGCAGAATTCAATCCAGAGGCTTGGGAACGACTCGCTCACTTGTTTCCTAGCAACGGCCGGGGAGGGGCCAGTCTGTAAATTTTGTCACTGTTGCAGAGAATCGTAACAGTTCTTGAACATTGTTATTTATACGTACATGACACACATTGTTACCATTGTTAATATTTCATTTGACTGTTAACTGTTAACTGCTTGTATTTTGTTTTTTAATTATTATTGTTACATTTTTGTTTGTGAAATGCAGTTACTTAGTGATTATGACAAGTATTCAGTTATTTGTGCCTTCTATATTTAATTTCATTAATCAAAATTTGAAGTGTTTTTGGCAATACATTCCTAAACTCCTATTCTTCGTTACCTAACACATGCATGAACACACACACACACACACACACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR052457	Family	Ankyrin repeat and death domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24125	ANKYRIN REPEAT AND DEATH DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf461_1.42 global RNA-seq network