Gene detail

Detailed information of CsqKR_Scaf45_11.38 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf45_11.38	SH3 DOMAIN-CONTAINING	chr6	27625440	27629634	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf45_11.38

AAATAATTAGAAAATATATGCAAAACAATTTAACGCAAGTCGGCATGGTAATGAAAATTAACTGGTCACTAACAATAGATAATGTTTACTATAATTAATTTAGATATATGGCAATGTACAACTACAAGCCTCAGAAGGAAGACGAAGTGGAGTTGAGAAAAGGAGATTATTACACAGTTACAGAGAAGTGTCAAGATGGCTGGTTCAAGGGCCAGTGTCTCCGAAGTGGTAATATAGGTGTCTATCCTGGAAACTATGTGCAGATGATCAGACACTCCAGTGCATTTAAGCCAGTTAATCCCAATGTGCTAAATATTCGTGCTAAGGGTCCTCTCTCCCCACCTCCCACTCTGACAGCCATTACCACTTCAAACACTCAACCCACAGTTGTACAATCCACCTCAGACAATGTTTCTTCCAATGCCAGTTCACAGCTGACAAGTTCATGCCAGGCACCACCTCTTCTGCCTCGCTCTTCAAAAACTCGCACAGCAAGTCCATCCTCACCTGTGACCAAATCTTCAAAATCATCCTCATCACTGCATGGTGGCAGTGCATCGTCTAGACTGCAAGCTCCACTCACATCAAGTTCCATTGCTTCAACAAAATCCTCTGCCAGCCACAGTCACTCCAAAAACAGCCACACTCACTCAGCAGGTAGCGGTCATGTATCCCGTCGAAGCAATCATCATTCAGGAGGAGGTGTCGTGACATCATCGCCAGGAGGAGGTCCTGTGTGGAGTGCTGCTAATCTTGCTGCTGTTCAACACTCCATGTCAACAACATCAAACATAACACCACCAAATGTTGTCCTCGGGGCGCCAGGGGACAACGTGTCTTCTCATTCAAAAGAAAAGAAGGAGAAAAAAGACAAAGAGAAGAAGAGCTTGGTGAAACTGTTGGCAGGGAAATCTAAGAAGTCAAAATCACCTGGAGGAGAAATTGATGCCTTGACAGAAGCTTCTGCTGGCCATGTCAGATCCGGTTCATACCCCTCTGATGCCGGTGCAGGAGCACTTTGTGATAGTCCACACAAGAAGACTGGATCTTTTGATTCTTCATCTTCGCCACCACAGTCTGCAAAACCTATTAGACCTAAACCATTAATAAGAGAAAAGTATCGTTGCATTGTGCCCTACCCACCACACAGTGAACATGAGTTAGAACTGCAGATGGGAGATCTTGTTTACGTACACAAAAAGCGGGAAGATGGATGGTTCAAAGGAACTCTAGCACGAAATGGCAGAACCGGTCTTTTTCCTGGAAGTTTTGTTGAGAAGATGGAATAAAATTTGTGATCTTTTTTTTTTTCTTTATTGTTTATGTAATACTCACATTGTTGTCAATCATTTAACACTTTTTTCAGATCATTGCATTTAAAACTTTTATTTAATTTTTACAAAGTATCGACCTGTAATGATCTAAAAAAAAAATTAGGTTAGATAAATTTTGAAGTTTGCTGTTGGTGTTAATCATGAATTTAATTTGTTTCTAAAAACACCTGCTTTCAGAATTCAGTGATCCAGACAAGTAGTTCTTAAACTTTATTTTTTTTCCTTCAATACCCGTTTGTAATAAAGTTGAAGGTAACATCCTCCACCTTAAATTTTATACTGATCATTGACATACAATGAATTATGTTGTGAAGTTGTAAGAATATATATAGCATTTTTTTCAGCATTTTCTGTATTTTCACAGCATCTGGAGGGTGTGCTGCAAATCATGTTCAGAATCAATGGGTTTTTTGTTTTTTTTAAGAAGTAGTGATTTTTATTTTACTTTTATGTTTAGTTAAAAATTCATACTAGCATGATCCATGATTTCTATCATGGCAGATTTACTGTCTAGATGTAGAGATTAATTACACAGAAAAAACAAATTGCCAATCACTTAAAGAAAAAAAACAAAGGGCAGAGCTGCATCATTCTGGATCTGAATGTTAATTTGTCTTTGATGTGTTCTAATGAAGTTGAGAGAAATTTTATTTGTGTATTATAAATAATGTCTCAGACATTTTGTCAAGTATTAACTTTCATGCATTTATTTATATGTTATAACCATGAAGACTTTATGCCCTATATAATTATTGATGATAATAAGTTATTAACTAGATAATAGATTTCCCTTGATCATCCTATCATTTAAAATAAGGGAGATATATCTTGTTTTCATCTGTATTTATTAATAATTGATGCCTGGGACTTAGATGGTAACCTTTTTTTTTTTCCCCAAATAGTCAAAGAAATGGTGAAAGACAAAATTGACTTCAGTATATATAAAGTTAGAATTAGCTTGATAAAATTACAAATGACAGATTTTCTATTTTTGATCACTGTAAGCAGCATCTAAACTGAAAAAAACTTAAATGACAATTCATTAAAAACTAAAACATTTGACATTAAACCACAGCCAGCTGTAAAGATAAGATTTGTTATATTCTGATTAAATCAAAATATGACAATACTTGTCCATTCATTAAGTTAAAAAAAAGAAAATAATCTTGATTCAACGTTCTGGCCAATTGGTCACAAATCTTTTTCTCTCTTGCTGCTCTAATTACCATCTTGGATTTCTAAACCATGGC

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14604	SH3_9	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452	Domain	SH3 domain	Interproscan
IPR035816	Domain	SH3RF1/SH3RF3, fourth SH3 domain	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR050384	Family	Endophilin/SH3RF	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14167	SH3 DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0032436	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0046330	Biological Process	positive regulation of JNK cascade	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf45_11.38 global RNA-seq network