Gene detail

Detailed information of CsqKR_Scaf44_43.8 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf44_43.8	PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN	chr8	16357973	16392582	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf44_43.8

ATGACGGATGCGTTGAAAATAACTTCAGAAGATGTCTTACTCATAATACAAGTTTCTGGTTTTGGGAAGAATGTTTCAGTTGATACTTTAAAGAGTTACTTTTGTGATGAAGGCCGTTCTGGTGGAGGTGAAATTAAGGAAATCAAACTAAATCCAAAGACAAAAAGAGTTAACATTACATTTTGTGATGTGAAAGTTGCTCAGAGAGTACTGAGAAAAAAGAAGCACAAAATTAACAAAGACAAATTAAAAGTGGAAATGCTTCAGCAAAGTACTTCAGATGAAGAAATTGAGAATAAACCAAAAACCACCATTTTGGTAAAATGGCAGGGGAAAGATCTTGCTGATGAAGAAGCTGAAATATTGGAAATGTATTTTGAAAATAAGAGGAAATCTGGGGGAGAAAATGTAACTAATTTTGATTATAATAAGAAGAAAAAGGAAATTTACATTACCTTTGAAGATGAAAAAGTTACTCAAAGGGTTTTGGCAAAAAGTCCTCACTGTGTCAATAAGAGAACACTTATGGTTGAACTTCTTGACCAGGCTGAGGAAGAAGAAAAAACAACAAAACTATTGAATACTGTTATGGTAACATGGGAAGGAAAAAACATCACCAAAGATGAATTTGAAGTTATTGAATTATATTTTGAAAGCCAAAAGAAATCTGGAGGTGGAACACTATCAGAATTCAAGCCTGACAAGAAGAAGAAAATCATCTACATAACATTTCAAGATGAAACAGTTGCCCAAAGAGTACTGTCGAGACAAAGCTACCAAATTGGAAAAAGAACACTGCAGGTTCAACCATTTGATGCTTCTACAACTGAAGAAACAAAAACAAAAAAATCAGTAGTTGTGAAAAGTGCAGAGAAGAAGATTGAAGAAGACGAAACTGAATTCATGGAAATGTACTTTGAAAATAAAAGGAAATCTGGTGGTGGAAGCATTGAAGAAATCAAATTGAGAAAAGGTGTCCTTTACATAACCTTTGAGGAAGATGGAGTGGCTGAAAAAGTTGTGCAAAGACAACACAAAGTTCGTGGCAGAAATCTTGAGGTCACTCTGGCCGGTGAAGATACAGAAACAGAATCCGAAGAAGAAAAGGAAGAAGAACTGTCTGATGAAGAAAATGAAGCACAGACAACAGTTGTTATTAAAGGTTGTGGTTCAATATCTGATGACACAGTAAGCTTATATTTTGAAAACAAGAGACGAGGAGGGGGTGTCCAAGTTAAAGATATTGATCGTGATGAAGAGGGACTCATGTATGTTACTTTTGAAAGTGTTGAAGATGTGGAAACAGTTTTGAAGAAAAGTCACACCATTGAAGGAAATCATGTAACAATAAAACCTTATCAACCACCACAGATGTACAAAGACAAAATTCTTCTGACTAATGTTCCTGAATCATCAACTACTGACACGATCACCAATTTCATAGAGGCTCGAAGTCACTATGATGTAGCTGATGATGGTGGGATACTATTTGGAGAAGATGTTGGCACAGTTCTTGTTTCATTTACAAAACCAATTGATTTTGAAAAGCTCTCCAAAAATCTGACTTCAAAGGAGTTTAAAGGGAAAATACTTCAGGTCAAAAGAATACCATTCTCCAAGAGTATACTTGTAAAAGGCTTTGGTGATGTAACACCTGATGCTATTCAGATGTATTTTGAAAATGAAAGAAGAAGTGGAGGAAAGGATGTCACAAATGTTGAAATAGATTCTGAAAGAAAATGTGCTGTTGTGTCATTTGAGGATGAAAATGTTGTTAGCAATGTACTAAAGCAGAAAGAACATAAGCTTTCCAGCCATAAAATAGAAGTTTCCCTTTACCACAGATGTCTTGGTTTGTCAGGAGGTTTAAGTCAGACGTGTTACCAAGGCTGGGTACTGCGAAATACAACATGTTACAAAGCATTCGTTCAGGCTCTGACGTGGTCTCAGTCACAGAAGAGTTGTCACGTTACTGGAGGTGGCAGTCTGACTCAAATTTCTTCACAGGACAAATATAATTATCTAACTTCATACTTTCATACACTCGGTGCCCCTTTCTGGATTGGTCTAAGATTTAAAAACGGAAACTTGACTTGGTCTGGGAAAGATGATGTTGTCGAGAACTCACCAAACAAAACGGGACATCAGCTCACGTCTCTCTGTTACGTGGTTTCCAGAAACACCAGTGCACAGTGGGAAGCCAAAAACTGTGGAGAACATTTCAGATTTATCTGTGAAGCGAAACCAACGGACTGTCGGCACATCACTACAACATCAGGTCACTGTATATGGATAAGCAGATTCGAGGCGTCCTGGTCTGAGGCTCGGTTCCACTGTCGAAGAGCTCATTCCGATTTAGCGGGGTCGAATGTGCCATACTGGGTTGGAATTCAGAAACTGTCTGATTCTGCTTTACCGGAATGGCTGGATGGCTCGAATGTTCAAGGACATTTTGTAGGAGCAAATAGAAATACACCTCTGTGTGGTTACGTTTCAAAAAGTCTGGATGGAACTGGATTAGACTGGGCTTTGTCAGACTGTACCCAACGCCATCAGTTTGTGTGTGAGCACGCTTTGCAAAAAGGTTCCATCACTTCTACGTCGACAACTTTTTCACCTCATGCTAAATCATCTGGCATTAGAACGTGGGGTTCTTCGGAAATAGTGTCAGATCTAGCCGATACTTTAAAACGAAAGAGTAAACAAGCATCCAGCAAAGAAAATGACCAAGCTAGCATGTCCTTCATTAATAATATTTTTAAACATCATCCTAAGAGAACATATGCACCTCCTGGACAAAACACTGCTACTGCACCTAGCACTGCAACCGCATCGTCTATGACGAAATCAGTTCTTACTTCATTTGACTCCCAAAACAAAAGTGTCAGTTCTAATCGTACCACAACATCGTTACTAGACACGACGTCAGTGTCTTCTACAATAGCAACAGCTCGTACGACTTCAGATGTTAAAACTTCCAGCGTTCACTATGCAAACCTAGTGTCCACATTCAATAATTTAAAAATGACATCGAAATCCCAACCTGTATTTTCGAGTAGTAAAGCAACCAGTCTTGTTTTCATGACTGTTCAGTTAAAAATGATGTCAAGATCTCCAAACGATTTTAGTAAATCAACTAAATTATTCCAGAAGAAAACCACAACTTTTGTACCATTTCATTTCAAATCTACTGCTGGGAAGAGTGATAATAGAAGTGATAATAATGGAACGACTGCTGAGACAACACTGCCTTCAGTTCTGAAAAGGGATCATTCAGTAAATAACGCCACTACCCTTTCAGAAGAAGACATGTTGAAATGGTGTCCAGATGGAGACGCCGATCAGTGTATTTCATCAGAAATCTGGAATAAAGATACATCTTTTGAAGAAGTAGCAGCTCAGGTCAATAAAGCGTACAGCAAACTTCAGTATTTAACAAAGCCAAGTTTGCTGTCTTCAACTCGAGAATCATCTATAGAGAGTGTAACCAGTGTTGTGGGACTTGTGGACCTCTTTCTGAACACGCATATACACCGAGTGAGATTTCGTAAAGTCGGAATGCTTCGTCAGTTTTCGTATTTAGATATTGACATTCAGCATGTTAAAGTAAATAACATTGAAGAGTTTGAGTTCAGAGATTCGCAAAGTTTGTGTAACATCAGTAATGTAACACAGACACCGGACAACATAATTACCACAGGCTACAGAAAGAAACAAGACAATACGAACTTTAAAATGTACTTTTTGGGACGTCCAAATCGGATCACATCTGACCATGTTTTAGCTCTGAGTATAATTACGTACATTGGTTGCAGTATCACACTACTAACACAGTTTATGTCTGTCACAGTGTTCACGTTTGTGGGATCATTGAACTGTGAACGCGTGTTCATTCACCGGAACCTGTGCATTGCCATAGGTGCTGCTCAAATAACTTTTCTAGCAGGAATCAAAGCGCAATCAACCGCATGGTTGCCAGCGAAACAAAACAAACCTAGAGGACAAAGAAACAACCGTGTGACACCGCAAAGAACTATAGACAGATCCAGAGTGGAAGCTTGGTGTAATCACCGGGAATCAAAAGAAACTGAGGATTCGGAAATAAGCGGAAACAGTCGATCATCTCTGGACGTGGACGAAATGGCATCGGTGTTCATGTGA

Transcript

CsqKR_Scaf44_43.8

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00002	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR000832	Family	GPCR, family 2, secretin-like	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR034464	Domain	PARP-10, RNA recognition motif 1 and 2	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR052056	Family	Mono-ADP-ribosyltransferase ARTD/PARP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14453	PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003950	Molecular Function	NAD+-protein poly-ADP-ribosyltransferase activity	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0010629	Biological Process	negative regulation of gene expression	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0070212	Biological Process	protein poly-ADP-ribosylation	Interproscan
GO:0140289	Biological Process	obsolete protein mono-ADP-ribosylation	Interproscan
GO:1990404	Molecular Function	NAD+-protein ADP-ribosyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf44_43.8 global RNA-seq network