Gene detail

Detailed information of CsqKR_Scaf423_1.7 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf423_1.7	TRANSCRIPTION INITIATION FACTOR TFIID	chr6	41019177	41039483	+

Gene Structure

More details in Jbrowse Sequence

CDS

CsqKR_Scaf423_1.7

ATGACAAACTCCTGGGCTAACATGCTTCTGTCCACTTCATCTTTTCTTAAAATCATCTTCACTGTAACAGGCAAAGATATTCAGCCATTCATAGACCAGTGGATATATCAGAGTGGTTGTGCAAGGTTCACAGGGAGTTTTGTTTTCAATCGTAAACGTAACGTGGTAGAACTGGAGATGAAACAGGACTTGGGATCAAGGGGATCTTTGAAATACGTTGGGCCTCTGACTGTGACGATACAGGAGCTGGATGGGTCGTTCAATCACACGTTTAAAATAGAGGAAAACAAAACAAAGTTTGAAATTACCTGTCACTCAAAAAGTAGAAGAAACAAGAAAAAGAAAATTCCACTGATGACTGGGGAAGAGGTTGACATGGATCTTAACGCAATGGACGCTGACTCGCCAGTCCTCTGGCTCAGAGTTGATCCTCAGATGCATCTGCTACGAGCTGTTTCCTGGGAGCAGCCTGACTACATGTGGCAGTACCAGGTCCGCTTTGAGAGAGACGTCGTAGCCCAGAGAGAGGCAATTTTTGCACTGGAGAAGTTTTCCACACCCCAGACAAGAATGGCTCTGACTGATGTGATAGAAAATGAACACACTTTCTACAAAGTGCGCACACAGGCATGTCTGTGTCTGGCCAAGGTTGCTAACATGATGGTGTCCACGTGGACAGGTCCTCCAGCAATGATGACAATATTCCGCAAACTGTTCGGATCTCACTCCTGTCCTGCAATCATCCGACAAAACAACTTCACAAACTTCCAGCACTACTTTCTGCTGAAGACTGTTCCTATTGCCATGGCAAAGCTGAGAAATGTTCACAACATCTGCCCACCAGATGTGATGAAGTTTCTTCTCGATCTCTTCAAATACAACGACAACAGCAAAAATAAGTATTCAGACAACTACTACAGATCTTCACTGATAGAGGCGTTGTCCTCAACAATCACATCAGCTGTCACAACCATCACAATTTCAGGACAGAATTTGATGATGGACAGTCTGAATTCAGACACAAAGATGATTCTGGAGGAGGTGACGAGATATTTAAACCTGGAGAAGCTGTTACCTTGTTACAGACACACAGTCACTGTCAGCTGTCTGAAGATAATTCGCAGACTGCAGAAGTTTGGACATCTGCCAAGTGAACTTGACCTGTTTAAGAATTACGCATCATACGGGATATTTAGAGACATCCGACTGGCAGCTCTAGAGTCTCTCGTAGACTTCATTAAATCTGAGAACAAGGCTGATCTGTTGCTGTGGATGTTGGATGTTGTAGAAACTGACCCGGATCATTACATCAGGTACAAAACTCTGTGTTACCTGATAGAGAATCCACCATTCAGAAAAAATGAAACTTCATCACTGCACAACTCAACTCTGGTAGAACGCTTGTGGAACCTCATGAATTCTGGTTTCTCCTACGACAGTCGACTGAGATGTGCTGTGACAGATTTGTACTTCACTTTGTACGGCAGAACTCGGCCTTCCTGTTTGCCCATTCCAGAAACTGTGATGGTTTTGAACCTTCGAGACAAAACTACAATGTTGAACCCCTCAGTTATACCAGAGAAAACAGAGGATGAGATGTTTGCTGAACAGGACAGACTCGTCACTGCAGCAGTTGGTCCATCTATCGAGACCCAGACCTTCGACACAGAGATCCTTGACATTGACGTGACCTCTGTGAAACACGAACTCACCTCCGCTCTCCTCCGACAAGACTCGAGCGAGAGAAAACATGAAGAAATTCTCAAAAGAAAAGTCGATGCAGATCTGCACAAACAGTCCCCAAGTCTTCTGCACATGTTGACAGAAAACATAAACCCAGCGAAAAAAATAAAACTAGAGGTGGATGTAGGACTAAAATCACCAGTTTCATCCATTATGTCGCCTCCAGCATCTCTGTTGTCACCCAGTGGCTCATTCGCATCCGAGTTTCTCAAATTTGTTGCGACCAAATCGGAGTCACACAGTGCGGAAAAATCACACACTTTGCCACCACCAACTACTCCTGTGGTGACAGAAACATTTAAACGTGATGACAGCATCAGCAGACTCAGCGAGGAATCCAGTTCCCCATCTCACATGTCACAGTCAACCTCAGATGTGCCAAGTACCCCAACCACTACTACAATATCATTCCCCATCTTACCAGCCCTGCCCCTGGACCTGTCTGCCAAAGTGGGAGAGTCTCACAGCAAATCACACAAGATGAAGAAGAAGAAGAAAAAGAACAAAAAACACAAACACAAACACAAACATGACAAAGAGAGGAAGGAACGAAAAGACGGAGACGAAAAGAAAGAGAAAAAAGACAGTTCAAAACACGACAGAGAGAAGGAGAGCATCATACCAAGTACTTTTACCTCTCCTCACCTCAGTCCTCCGAGCTCTCCTGAATTTGAAGTTATGTGA

Transcript

CsqKR_Scaf423_1.7

AAGCTAAAGAAAATGGCGGCGATCACAAATAATAAATATTGGCTTTTGCTTAAATAATGATAACAATGTACCCAAATACATCAGTCAGAAAAGATACAAAGCCTGATGCCCAGAGACCTTTTAAATTAGCTCATCAGACATTATGTATAACTGGGATCAATTTTGAAAAACAGCTGATTGTTGGCTACGTGGAACTGGCGCTTCATCCTCAGCGTCCAGACCTGAGACGACTCAAAATAAACAGCAAACAATGCAGAATCTACAGAGTGTGTGTTAATGATCACTGGGAGGCTCCTTTTCTCTACAATGACCCAACACTGGAAATCTGCCAGGGCGACGTTAAACAACGAAACTTGGACTTTTTCCAGAATTGTCACTTGTCAGCCATGACAGCGGTCGACGCTGACAACACAAACGGCGAAGTGACAATCCGACTGCCACAGATTGTCTGGCCTCTTATTACAGAACTCAGGCCGTTAAGAGTTTGTATTGAGTTTTCACTGGAGAAGCCCCAGGGAGGGATACACTTTGTGGTTCCGGACATTGAGGGGACACTCGCAGAAAAAAGTGCTCACATGTTTACATGTGCCCAGGAAAACACAGCCAGACTGTGGTTTCCATGTGTGGATGTGTTTTCTGAGCTGTGTACGTGGAAACTGGAGTTCACGGTGGACAGGGACATGACAGCCGTGTCGTGCGGGGACCTCATTGAGATCATCTACTCACCTGACATGAAGAAGAAAACCTTTCACTACTTCCTGTCAACACCCACCGCAGCACCTAACATCGCCCTGGCTGTCGGGCCGTTTGAGATTGTGGTTGATCCGTACATGCATGAAGTAACTCACTTCTGTCTGCCTCACCTGTCCTCCATCTTGAAACACACAACTAGCTACTTGCATGAGTCATTTGAGTTTTACGAGGAGCTGTTGTCAAGCCGATACCCCTACTCGTGTTACAAACAGGTGTTTGTAGATGAAGCCTACGTTGATTGTGCTTCGTATGCTACCATGACAATATTCAGTACTAATCTGTTGCACTCAGCTCGTATTATTGATCAGACGTTTGAAACTCGACAGTTAATGGCAGGAGCCATCGCTTACCAATTCTTTGGTGCTTTTATTACAATGCAATATTGGACTGATGCTTGGTTGTCTAAGGGGATTGCTGGCTACCTGACGAGTCTGTTTGTTAAGAAGACATTTGGAAACAACACTTACAGATACGCTGTGTCAGAGGATCTGAATGAGGTGTGTGATTACGAGACAAAGATTGGAGGAATCATTCTGGACCCGTCAACACGAGACAGCACCCACCACTTCTCAGTGAGCAACTACCACACCGTGTCACCTCGCTACTACAGAATGCTGAAAAAAAAAGCACAACTTGTGATGAGGATGCTGGAGTTTCGACTTGGGACAGAGCTCTTGCTGCAGGTGCTCAACAAACTTCTGGCTCTTGCTTACGCAGCCTTGTCAACAGAAATTTATGACAAACTCCTGGGCTAACATGCTTCTGTCCACTTCATCTTTTCTTAAAATCATCTTCACTGTAACAGGCAAAGATATTCAGCCATTCATAGACCAGTGGATATATCAGAGTGGTTGTGCAAGGTTCACAGGGAGTTTTGTTTTCAATCGTAAACGTAACGTGGTAGAACTGGAGATGAAACAGGACTTGGGATCAAGGGGATCTTTGAAATACGTTGGGCCTCTGACTGTGACGATACAGGAGCTGGATGGGTCGTTCAATCACACGTTTAAAATAGAGGAAAACAAAACAAAGTTTGAAATTACCTGTCACTCAAAAAGTAGAAGAAACAAGAAAAAGAAAATTCCACTGATGACTGGGGAAGAGGTTGACATGGATCTTAACGCAATGGACGCTGACTCGCCAGTCCTCTGGCTCAGAGTTGATCCTCAGATGCATCTGCTACGAGCTGTTTCCTGGGAGCAGCCTGACTACATGTGGCAGTACCAGGTCCGCTTTGAGAGAGACGTCGTAGCCCAGAGAGAGGCAATTTTTGCACTGGAGAAGTTTTCCACACCCCAGACAAGAATGGCTCTGACTGATGTGATAGAAAATGAACACACTTTCTACAAAGTGCGCACACAGGCATGTCTGTGTCTGGCCAAGGTTGCTAACATGATGGTGTCCACGTGGACAGGTCCTCCAGCAATGATGACAATATTCCGCAAACTGTTCGGATCTCACTCCTGTCCTGCAATCATCCGACAAAACAACTTCACAAACTTCCAGCACTACTTTCTGCTGAAGACTGTTCCTATTGCCATGGCAAAGCTGAGAAATGTTCACAACATCTGCCCACCAGATGTGATGAAGTTTCTTCTCGATCTCTTCAAATACAACGACAACAGCAAAAATAAGTATTCAGACAACTACTACAGATCTTCACTGATAGAGGCGTTGTCCTCAACAATCACATCAGCTGTCACAACCATCACAATTTCAGGACAGAATTTGATGATGGACAGTCTGAATTCAGACACAAAGATGATTCTGGAGGAGGTGACGAGATATTTAAACCTGGAGAAGCTGTTACCTTGTTACAGACACACAGTCACTGTCAGCTGTCTGAAGATAATTCGCAGACTGCAGAAGTTTGGACATCTGCCAAGTGAACTTGACCTGTTTAAGAATTACGCATCATACGGGATATTTAGAGACATCCGACTGGCAGCTCTAGAGTCTCTCGTAGACTTCATTAAATCTGAGAACAAGGCTGATCTGTTGCTGTGGATGTTGGATGTTGTAGAAACTGACCCGGATCATTACATCAGGTACAAAACTCTGTGTTACCTGATAGAGAATCCACCATTCAGAAAAAATGAAACTTCATCACTGCACAACTCAACTCTGGTAGAACGCTTGTGGAACCTCATGAATTCTGGTTTCTCCTACGACAGTCGACTGAGATGTGCTGTGACAGATTTGTACTTCACTTTGTACGGCAGAACTCGGCCTTCCTGTTTGCCCATTCCAGAAACTGTGATGGTTTTGAACCTTCGAGACAAAACTACAATGTTGAACCCCTCAGTTATACCAGAGAAAACAGAGGATGAGATGTTTGCTGAACAGGACAGACTCGTCACTGCAGCAGTTGGTCCATCTATCGAGACCCAGACCTTCGACACAGAGATCCTTGACATTGACGTGACCTCTGTGAAACACGAACTCACCTCCGCTCTCCTCCGACAAGACTCGAGCGAGAGAAAACATGAAGAAATTCTCAAAAGAAAAGTCGATGCAGATCTGCACAAACAGTCCCCAAGTCTTCTGCACATGTTGACAGAAAACATAAACCCAGCGAAAAAAATAAAACTAGAGGTGGATGTAGGACTAAAATCACCAGTTTCATCCATTATGTCGCCTCCAGCATCTCTGTTGTCACCCAGTGGCTCATTCGCATCCGAGTTTCTCAAATTTGTTGCGACCAAATCGGAGTCACACAGTGCGGAAAAATCACACACTTTGCCACCACCAACTACTCCTGTGGTGACAGAAACATTTAAACGTGATGACAGCATCAGCAGACTCAGCGAGGAATCCAGTTCCCCATCTCACATGTCACAGTCAACCTCAGATGTGCCAAGTACCCCAACCACTACTACAATATCATTCCCCATCTTACCAGCCCTGCCCCTGGACCTGTCTGCCAAAGTGGGAGAGTCTCACAGCAAATCACACAAGATGAAGAAGAAGAAGAAAAAGAACAAAAAACACAAACACAAACACAAACATGACAAAGAGAGGAAGGAACGAAAAGACGGAGACGAAAAGAAAGAGAAAAAAGACAGTTCAAAACACGACAGAGAGAAGGAGAGCATCATACCAAGTACTTTTACCTCTCCTCACCTCAGTCCTCCGAGCTCTCCTGAATTTGAAGTTATGTGAAATACACGAGTTTTATAACAAGTATCATAACTCTTCTCAAAGACCTTTGTGGAATCTGAAATTACGTGATTCTTTCCTGAGTCACACATCTGAGTGTGAAGTTAAACTGAAAACAGTTATATTTGAAACAGAAGTGAAAAAACATTGAGGAATCATCTACATTGTGACATGAGAAACAAGGAAAAGATTTCAAAGTGTTTTTACAGAATGGAAACTGCTACAGAAACATCTTTACACATTACATGTGCATGATTATTAGATTGTTTTACAAAAATTCAGTAATGTAAAGATATTTATTTCTTCCTTCATGACACATCGCTTCACAAAGAAAAACAGTCTGGATTAATTGTATTACAGTTGTTTCTTTTATGTATGCAGTCAGGAGGGGACCAGTATTATTATTTCCATGTTTTCTTTTTAATTATGTGACAAATTTCAACACAGAAAAATTTCATTTTTCATTTATTATTGTGGTCAAAACAAAATTTCAGTGACATCAAAAATGGGATCATGCTATTAAAATTTTTTCTTTTTGTTTTTGTTTTTTATCATTTTACTTTCTCTTTTTTTCCTTTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR037813	Family	Transcription initiation factor TFIID subunit 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15137	TRANSCRIPTION INITIATION FACTOR TFIID	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf423_1.7 global RNA-seq network