Gene detail

Detailed information of CsqKR_Scaf41_15.30 in Chrysomallon squamiferum Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
CsqKR_Scaf41_15.30	TETRATRICOPEPTIDE REPEAT PROTEIN 4	chr6	16351388	16361808	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

CsqKR_Scaf41_15.30

GGTTACTCGCAAAATGCGGACATGACTTTCACTATCAATTTTTTATTATTATTATTATTATTTTTTTTTTTTTCGGTTTTAATTATTTTATTTAATTACACTTTCTCATTTAATAAATTTTCATTACTGTTAATCATAAATATGCATTAACTGTTATTTATTACAGAATTTTTTTAGAAAATACAGAAAATACCTTTAAATTAAAATCTTTTTTATTGTTTTGTTTAGGATTAAGGTGATAGTTACTGTCTGAATTACATTACGCTCACATCTGATTTATTTGGTTAGGTTTTAGAGTGACACTGACAGAGGAAAGAGTTGTTTCTTAATGGCGCAGAACGCCAACTCCGCATTTTAGGGCTATCCTTCACAAATTACGACGAGAGATATTGTTCATGAATAACACCACACTGAAGATAAAATGAGTAAGACTTCAAATGAATATGATAAAGATATTTGTCAAAAACTTGATGAAGATCTCAACCTGTGTATTGCTGAAGCAAAAAAAGATGCACATGTTAATCCATATTCCACAGACAATGGTGAAGTGAAGAATTTTGAAGCAGAACTTGAGGAAATGATGAAGCATCCAGCATTTATGAAGGAAATTGATCTGAGTAAACCTTTAACCCCAGATGTTGAAGGTTTGATGGCACTCAAATATGAAAGTGAAAATCCTACTGGCAATTATCGCTCAGCATTAAATGATTGTATTTTTGCAAGGAAGTTCAAACCAGACCACTTTAAAGCTATATTCAAAGGTGCTCAGTGTTGTTTGGAGATGGGCAAGTCACAAAGTGCAATCAACTGGTGTGAAGCTGGTCTTCTGTTGGAGCCAGAAAATCCCAAACTGTTAGAAATGAGAAAAAAAGCAGAAATACTGAAGAAAAACCAGGATCGAGACAGAAGAAAACAAGAAGTTCAAGAAAGGAAAGAAATGGAGGAAGAACAAAAACTTATATCTGTAATAGAGAGACGAGGAGTTCATCTAGCTGGAATGAAGCAGAATTCCAAGTTAAAAAAAGGAAGTTCGCTGTTGTTGACAAGTGTAGAGACATGTAACCCATCAGGAGCAAAGGTTTTTCAAGATGAAAATGGAATTCTTCATTGGCCAGTGATGTTTTTCTATCCTGAATATGGGGAGACGGATTTCATAGAAAAATTCTGTGAAAATGATAGTTTCTTTGATCATCTTGTTTGCATGTTTGGACCAGAAGGACAGCCTGTTCACTGGGATGCTGATTCCAAGTATACCCCTGAGCATATTCAGATCTTCTTTGAAAACAGACAAGAAGAAAAGTTGTATCCAGTACCTTCCAAGACACCATTATTGAAAATTTTACAACATGAAAAGTATGTTGTGACAGGTGGAACACCAAGTTTCATTCTTTTGTCAGTTCCTTCTAAGTTTGCAACAGAATTCTTGAAGAGATATGAATAATTAAAAATATTATCTAAATTTATTTGTTTTTGTCATCTATGCCACAAATGTATTTTCCATTTTAATGCCATTGTTTTAGTTTACAAATTTCATATTACAAATTCAAAAAATCCTTTGACTGATATATTTCTTGTATATTTTATCATTAATGACAAGAATAATAACAGATCATAGTCTTGAGATGAAATATAAAAATATTTAAATTATTAGACACTTTCATGTTGGTATTTAAAAACCAAATTACATCTGCAAATTGCATCACTCTGTGGACAGAGTATTGATGGTTACAGGTCAAATTCTTCTCAGTGGGACTTGTTTATCAAAAGCTATGACAAACATGTCTTGGCCTTGGAAAGGTGTATATTAATGATCCCTTCATGATGCTTGCTGTAAATCAGTAAAGATTAGCCCTGTTTGTGCTAGCCTTATATATGCTCTTTCACCATTTTATTGGCAAGTATTTATGATGGCATATACCAAGCTTATAACAATTAATTAAAAACAGCTCATCATCATTAATTAAAACATTTCTTCCTTCTGAATTTAGAAATGAAGTCAATTTCTAAACACTATGCTAGCACTCCCGTGATCTGAAAGGAAAGCTGTGATATATAAATATGTGATAACCAGTTGTTAGCACCACAGATACAATGTATATTATGCTTGTTCATCAGTGTAATCAGTCTTGGTGAAAAAATACCTGATGCATAATTAACCTTTTTTTTTCTCTTCAAATATATCAAACTTGTCTACATTTTTAAAACTCTTTTTAACAGAAATGTGTGTGTGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18972	Wheel	Cns1/TTC4 Wheel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR044059	Domain	Cns1/TTC4, wheel domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46035	TETRATRICOPEPTIDE REPEAT PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0030544	Molecular Function	Hsp70 protein binding	Interproscan
GO:0051879	Molecular Function	Hsp90 protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for CsqKR_Scaf41_15.30 global RNA-seq network